Input parameters:

  Query = gi_186682688_ref_YP_001865884.1_ (Len=338)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682688_ref_YP_001865884.1_, Len=338):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNSNRGSAVLSSATFKVQASSTGMTDNHRLRLFSGSANLQLSQEVARYVGMDLGPMIRKRFADGELYVQIQESIRGCDVY 80  
WD40-rpts                                                                                      

Query       81 LIQPCCQPVNDHLMELLIMVDACRRASARQVTAVIPYYGYARADRKTAGRESITAKLVANLITEAGANRVLAMDLHSAQI 160 
WD40-rpts                                                                       (______________

Query      161 QGYFDIPFDHVYGSPVLLDYLASKELPDLVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNIIGDVKGKT 240 
WD40-rpts      ____________________WD 1_________________________________)                      

Query      241 AVLVDDMIDTGGTIAEGARLLREEGARQVYACATHAVFSPPAMERLSSGLFEEVIVTNTIPIPENNRFPQLVVLSVANLL 320 
WD40-rpts                                                                                      

Query      321 GETIWRIHEDTSVSSMFR 338 
WD40-rpts                        

1 WD40-repeats found in QUERY=gi_186682688_ref_YP_001865884.1_ (Len=338):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   146-218      3.70  267.62  0.01531       15.0%     26.29

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  146-218    GANRVLAMDLHSAQIQGYFDIPFDHVYGSPVLLDYLASKELPDLVVVSPDVGGVARARAFAKKLNDAPLAIID

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS-----------------GSEDGT----------------IKVWD