Input parameters:
Query = gi_186682692_ref_YP_001865888.1_ (Len=286)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186682692_ref_YP_001865888.1_, Len=286):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQTDPKPGTLYVVGTPIGNLEDITFRAVRILQTVDIIAAEDTRHTGKLLQHFQVKTPQVSYHEHNRTSRIPELLEHLINN 80
WD40-rpts
Query 81 KAIALVSDAGMPGISDPGYELVKACIEAGISVVPIPGASAAITALSASGLPTDRFVFEGFLPAKTQQRQEHLESLQTESR 160
WD40-rpts (___________________________WD 1_____________________
Query 161 TLIFYESPHRLRDTLQDLAQVWGSDRQIVLGRELTKLYEEFWRGTIAEAIAHYSQREPQGEYTLVVAGIPASQPQLTEEE 240
WD40-rpts _____)
Query 241 LKAELKLLISQGISRSQASRQLAKFTSLPRRQLYQLALSLVVTPES 286
WD40-rpts
1 WD40-repeats found in QUERY=gi_186682692_ref_YP_001865888.1_ (Len=286):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 108-166 3.47 258.11 0.02050 20.0% 1.79
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 108-166 AGISVVPIPGASAAITALSASGLPTDRFVFEGFLPAKTQQRQEHLESLQTESRTLIFYE
WD40 Template TGECLRTLSGHT--------SGVTSVSFSPDGKRLVSG-----------SEDGTIKVWD