Input parameters:

  Query = gi_186682737_ref_YP_001865933.1_ (Len=703)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186682737_ref_YP_001865933.1_, Len=703):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSRIRFLMCPPDHYDVDYVINPWMEGNIHKSSRDRAVEQWQGLHQILKQHAIVDLVSPQKGWPDLVFTANAGLVLGENV 80  
WD40-rpts                                                                                      

Query       81 VLSRFLHKERQGEEPFFKEWFEQNGYIVNELPKDLPFEGAGDALLDREGRWLWAGYGFRSELDSHPYLAKWLDIEVLSLR 160 
WD40-rpts                                                                                      

Query      161 LIDERFYHLDTCFCPLANGYLLYYPGAFDSYSNRLIEMRVAPEKRIAIAEADAVNFACNTVNVDSIVIMNKASDALKTRL 240 
WD40-rpts                                                                                      

Query      241 ADVGFQVLETPLTEFLKAGGAAKCLTLRVTEPVRDEIHANVSVESRIIRMEGHLLDAGLINRALDLIIDAGGSFQVLNFN 320 
WD40-rpts                                                                                      

Query      321 LGEQRQSTSAAEVRVSAPSHEVMEEIISRLIDLGAVDLPHDERDAILEPVIQNGVAPDDFYVSTIYPTEVRINGQWIKVE 400 
WD40-rpts                                                                                      

Query      401 NQRMDGAIAITQTPSGLVARCKILRDLEVGERVIVDVLGIRTIRKTESREQRSTQEFSFMSAGVSSERRVELVVEQVAWE 480 
WD40-rpts                                                                                      

Query      481 LRKIRDAGGKVVVTAGPVVIHTGGGEHLAQLVREGYVQALLGGNAIAVHDIEQNIMGTSLGVDMKRGVAVRGGHRHHLKV 560 
WD40-rpts                                       (______________________________________________

Query      561 INSIRRYGSIPKAVEAGAIKSGVMYECVHNNVPFVLAGSIRDDGPLPDTQMDLIQAQEQYAKHLEGAEMILMLSSMLHSI 640 
WD40-rpts      _________________WD 1___________________________________________________________

Query      641 GVGNMTPAGVKMVCVDINPAVVTKLSDRGSVESVGVVTDVGLFLSLLIQQLDKLTSPYVNKVG 703 
WD40-rpts      ___)                                                           

1 WD40-repeats found in QUERY=gi_186682737_ref_YP_001865933.1_ (Len=703):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 28   514-644      2.80  230.34  0.04789       25.0%     13.80

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  514-644    EGYVQALLGGNAIAVHDIEQNIMGTSLGVDMKRGVAVRGGHRHHLKVINSIRRYGSIPKAVEAGAIKSGVMYECVHNNVPFVLAGSIRDDGPLPDTQMDLIQAQEQYAKHLEGAEMILMLSSMLHSIGVGN

   WD40 Template    TGECLRTLSGHT----------------------SGVTSVS-------------FS----------PDG----------KRLVSGS--EDGTIK----------------------V------------WD