Input parameters:
Query = gi_186682777_ref_YP_001865973.1_ (Len=375)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186682777_ref_YP_001865973.1_, Len=375):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVNQNLTATEIGFTHEDFAALLDKYDYHFSPGDVVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVDSPEEVLQSNE 80
WD40-rpts
Query 81 TREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFATNRGGALVRIEGLRGFIPGSHISTRKPKEELV 160
WD40-rpts
Query 161 GEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVF 240
WD40-rpts (_________________________WD 1________________________)
Query 241 NVNDEVKVMIIDLDAERGRISLSTKQLEPEPGDMIKNRDLVYDKAEEMAAKYREQLLAKQQGATAAPAAPADVLAEEDIP 320
WD40-rpts
Query 321 PATELEDEIPPAAELEEEIPPAAEIEEVTPVVAEIQEKIPATTETEEEIPAAIEE 375
WD40-rpts
1 WD40-repeats found in QUERY=gi_186682777_ref_YP_001865973.1_ (Len=375):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 11 173-227 3.08 242.02 0.03357 20.0% 18.32
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 173-227 EERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISE
WD40 Template TGECLRTLS---------------GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD