Input parameters:
Query = gi_186682843_ref_YP_001866039.1_ (Len=353)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186682843_ref_YP_001866039.1_, Len=353):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGVSSTTPHLLRAARGEVVDRPPVWMMRQAGRYMKAYRDLREKYPSFRDRSEIPDVAIEVSLQPWKAFQPDGVILFSDIV 80
WD40-rpts
Query 81 TPLPGLGIDMDIAEGKGPIIHSPLRTQEQIDRLHPLEPEAALPFIKTILQALRSEVGDKSTVLGFVGAPWTLAAYAVEGK 160
WD40-rpts
Query 161 GSKTYSIIKNMAFSDPTILHQLLTKLADAIAIYARYQIDSGAQVVQMFDSWAGQLSPQDYDTFALPYQQRVFQQVKQTHP 240
WD40-rpts (_
Query 241 DTPLILLVSGSAGVLERMAQSGADIVSVDWAVDMADARARLGKQVKVQGNLDPGVLFGSKQFIRDRILDTVRKAGNWGHI 320
WD40-rpts __________________________________WD 1__________________________________)
Query 321 LNLGHGVLPETPEENVAFFFETAKELNFAGVKN 353
WD40-rpts
1 WD40-repeats found in QUERY=gi_186682843_ref_YP_001866039.1_ (Len=353):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 239-313 2.81 230.83 0.04718 20.0% 19.12
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 239-313 HPDTPLILLVSGSAGVLERMAQSGADIVSVDWAVDMADARARLGKQVKVQGNLDPGVLFGSKQFIRDRILDTVRK
WD40 Template TGECLRTLSGHTS------------GVTSVSFSPD---------GKRLVSGSEDGTIKVWD--------------