Input parameters:
Query = gi_186682966_ref_YP_001866162.1_ (Len=349)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186682966_ref_YP_001866162.1_, Len=349):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNEFDQSLEDQSMNYVGMIAKFPLGVHDLKSFITPENHLFVLCHLGIPDIDIEQWRLKISGLVEQSLELSYQNLLSLEYR 80
WD40-rpts
Query 81 ELTIFHQCSGNPLEPKVPTRTISNVTWGGVSLREILNQLQVKPEARYVWFAGTDRGAYEGVSSDSYIKDIPIAKALDNDV 160
WD40-rpts
Query 161 LLAYKLNGEFLSAERGFPLRLVVPGYYGTNFVKWLSHIYVTDRRSPGPFTTTFYNDRVGGDDATLKPVWEVAPESVIVHP 240
WD40-rpts (_
Query 241 SQNELLYLQPQTFSGWAWASKGIQSVDVSTDGGITWQAVEVEARLQYAWQRFTFQWTPPTPGQYSLMSRATDYDGAIQPI 320
WD40-rpts ________________WD 1_________________)
Query 321 QQERNAVYIVAVTVKETTVKESKPFTVAE 349
WD40-rpts
1 WD40-repeats found in QUERY=gi_186682966_ref_YP_001866162.1_ (Len=349):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 13 239-278 2.84 231.81 0.04580 17.5% 28.58
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 239-278 HPSQNELLYLQPQTFSGWAWASKGIQSVDVSTDGGITWQA
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD