Input parameters:
Query = gi_186683089_ref_YP_001866285.1_ (Len=320)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186683089_ref_YP_001866285.1_, Len=320):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRIARNITELVGRTPLVQLNRIPQTEGCVAEIVVKLESLNPSASVKDRIGVSMINAAEEEALITPEKTILVEPTSGNTGI 80
WD40-rpts
Query 81 ALAMTAAAKGYRLILTMPETMSGERRAMLRAYGAELELTPGMEGMSGAIRRAQQIVNSTPNTYMLQQFRNPANAKVHRET 160
WD40-rpts
Query 161 TALEIWEDTDGQVDIVVAGVGTGGTITGVAEVIKARKPSSKAIAVEPANSPVLSGGQPGPHKIQGIGAGFIPQVLKLKLI 240
WD40-rpts (__________________________WD 1_________________________)
Query 241 DEVITITDEEAITYSRRLAKEEGLLSGISSGAALCAAIRVAQREENKERLIVMIQPSFGERYLSTPLFQDLEARLPASVG 320
WD40-rpts
1 WD40-repeats found in QUERY=gi_186683089_ref_YP_001866285.1_ (Len=320):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 169-225 2.81 230.64 0.04745 20.0% 10.26
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 169-225 TDGQVDIVVAGVGTGGTITGVAEVIKARKPSSKAIAVEPANSPVLSGGQPGPHKIQG
WD40 Template TGECL----------RTLSGH-------TSGVTSVSFSPDGKRLVSGSEDGTIKVWD