Input parameters:

  Query = gi_186683146_ref_YP_001866342.1_ (Len=703)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683146_ref_YP_001866342.1_, Len=703):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSASTIISDNPLLQGVGLPPFAEIKPERVVPAFNQLLAELDQQLATLEASVQPTWSGLVEPLEKLTERLTWSWGVVNHLM 80  
WD40-rpts                                                                                      

Query       81 GVKNSPELREAHEIVQPLVVQFINKLGQSQPIYNAFKALRTSENWATLELAQQRIVEAAIRDAELSGVGLEGEVRERFNA 160 
WD40-rpts                                                                                      

Query      161 IQMELAELSTKFSNHVLDATKAFSLTLTTQAEIEGLPPSLVSLAAQVARAAGESNATPENGPWRITLDFPSYGPFMQHST 240 
WD40-rpts                                                        (_____________________________

Query      241 RRDLREKLYKAHITRASTGDLDNNPLIERILKLRQELADILGFKSFAQLSLASKMAPNVEAVNALLEELRHASYDAAVKD 320 
WD40-rpts      _________________________________________WD 1___________________________________

Query      321 LVELKAFAAAQGAAEAEDLKHWDISFWAERQREAKFAFTAEELRPYFPLPQVLDGLFGLVKRLFGVTVTSADGQAPVWHE 400 
WD40-rpts      __________________________________)                                             

Query      401 DVRYFQIADETGSPIAYFYLDPYSRPAEKRGGAWMDVCINRAKITENGVTAIRLPVAYLVCNQSPPVDGKPSLMTFYEVE 480 
WD40-rpts                                                                                      

Query      481 TLFHEFGHGLHHLLTKVNYPGAAGINNVEWDAVELPSQFMENWCYERTTFFGMAKHYETGEALPEHYYQKLLAARNYMSG 560 
WD40-rpts                                                                                      

Query      561 TAMLRQIHLSSLDLELHYRYHPGSSETPSDVRHRIAKTTTVLQPLPEDAILCAFGHIFEGGYAAGYYSYKWAEVLSADAF 640 
WD40-rpts                                                                                      

Query      641 AAFEEAGLEDEEAIKATGRRYRDTVLALGGGQHPMEVFKTFRGREPSTIALLRHNGLVSAAVN 703 
WD40-rpts                                                                     

1 WD40-repeats found in QUERY=gi_186683146_ref_YP_001866342.1_ (Len=703):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   211-355      2.84  231.95  0.04560       27.5%     -10.69

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  211-355    AGESNATPENGPWRITLDFPSYGPFMQHSTRRDLREKLYKAHITRASTGDLDNNPLIERILKLRQELADILGFKSFAQLSLASKMAPNVEAVNALLEELRHASYDAAVKDLVELKAFAAAQGAAEAEDLKHWDISFWAERQREAK

   WD40 Template    TGECLRTLSGHTSGVTSVSFS------PDGK-------------RLVSGSEDG----------------------------------T----------------------------------------IKVWD------------