Input parameters:

  Query = gi_186683200_ref_YP_001866396.1_ (Len=782)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683200_ref_YP_001866396.1_, Len=782):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIDEQEIEKLWQAFKVLDVDGNGAISTDELGEVMRSLGQNPTETGLRDLIKEIDVDLSGTIDFDEFKTLMIAKVGDRESR 80  
WD40-rpts      (____________________________________________________________________WD 1_______

Query       81 LKLAFSAFDEDNSGQITAVELRTVMSQFGLTDAELKEMLQEVDHDGDGSIDFEEFCQLVLEESESKTGYKDSPISLESSL 160 
WD40-rpts      ____________________________________________________________)                   

Query      161 KTVATNNTPVADTTQPTLQEATSNTTPELAQLREQLVQHPNSPNQKRSGTSRLQMQIGLFRLIQGAAYRSFRESFSANHE 240 
WD40-rpts                                                                                      

Query      241 THLRVKNLPYRITDFVEFVKQAIALYKGLGVVEEACYPVLDAVVESIADEYARLQERIKDWKTVAKTPEMLAEEKKILEA 320 
WD40-rpts                                                                                      

Query      321 RSKFANVKEKFAAGVEFAITIKKKSLSLGDIVEGVLAINELNRLRGIEMNEEMAPPPPKSEGNPRDYLFKWNRVILSQAT 400 
WD40-rpts                                                                                      

Query      401 EEVDGAMMPVAYWYEDFMPKLLAAFSVSTAADIQSNTIPDEAALDEWYDLTKKSGEFNRYGADVAENFLNCTAKEKLILK 480 
WD40-rpts                                                                                      

Query      481 QAWRLTHHYLNGVQKRRERLEFGRESGALSQYVSFIDVYLNRTEVKDSQMRVSFPYYIGPAVWRFFHTTAEIVCTKTDIQ 560 
WD40-rpts                                                                                      

Query      561 QKTLMAIFKDFFQLFATMYPCPYCRHHLNMYVVQNKEVDMYPVEYLVLGRDPNLRDFEVSLEAKLSTVVDGSSLRLFFWK 640 
WD40-rpts                                                                                      

Query      641 LHNTVSSSIARSEEWYHKDEKAFYTTRFWPSLDSELARANALRYTSIETARIYNIYGMLKPLARLTGVKTELPKLLQKGD 720 
WD40-rpts                                                                                      

Query      721 ENSLKEACIVAQNHIADLEEAVIRGEFLQETYYFDPDVVDKAPLFTPEEEEFARTGMFIEAA 782 
WD40-rpts                                                                    

1 WD40-repeats found in QUERY=gi_186683200_ref_YP_001866396.1_ (Len=782):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-141      3.58  262.73  0.01779       12.5%     -6.56

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-141    MIDEQEIEKLWQAFKVLDVDGNGAISTDELGEVMRSLGQNPTETGLRDLIKEIDVDLSGTIDFDEFKTLMIAKVGDRESRLKLAFSAFDEDNSGQITAVELRTVMSQFGLTDAELKEMLQEVDHDGDGSIDFEEFCQLVLE

   WD40 Template    TGE--------------------CLR-------------TLS------------GHTSGVTS------------VSF-----------SPDGKRLVS------------GS------------EDGTIKVW---------D