Input parameters:
Query = gi_186683217_ref_YP_001866413.1_ (Len=627)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186683217_ref_YP_001866413.1_, Len=627):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPIAFGREFPRLPAELRGMRVSRMLLNSNEVSRYHALIDWEQDHLVVIDQGSVNGVYVNGKPQTRSVLANGDTLQIGPYL 80
WD40-rpts
Query 81 ITVKFGASVSEPDTSPPSTIHFNANTNLPDPTLPVAQPLTPLASNFPPLAFQAENVAVQALHATGLSVDESDYLAIGAGL 160
WD40-rpts (__
Query 161 GSFVWTDLLRISGVRPDKIVALGLEAEPYARYKRLCLNSQIPLYERLRSNSDSCPDNIWGWPSYALREAWRDCSKGQINS 240
WD40-rpts ___________________________WD 1____________________________)
Query 241 AFKYLWQVFAEPTFAETYTPRAGNVFDSIDREAKRIGWNQIYRYGRVRAIRKTDDGRYCVAYSRAPGNYAFLVTRYLHLA 320
WD40-rpts
Query 321 TGYPAIQFLPDLQAYREKYQDFKSVVNAYEAHDHVYEQLERQGGTVLIRGRGIVASRVIQRIYEARKRNRNIAVLHLMRS 400
WD40-rpts
Query 401 PKPQGNKFQNTQRLVKNHYEFQPFNWPKACWGGELRAMLEKAPPDERKRLLADWGGTTTADRHDWQQITAQGISEGWYQI 480
WD40-rpts
Query 481 TFGEVLDVERDAQNRTITHIREQSFGEIKLLADFIVDATGLDAKVDANPLIADLVKHYNLPVNHLGRLTVANNFELVEMR 560
WD40-rpts
Query 561 SGKGQMYAAGAITLGGPYAAVDSFLGLQYAALVAVDGLAATRAPGVHRLNTISSFRQWLKWVLNQSP 627
WD40-rpts
1 WD40-repeats found in QUERY=gi_186683217_ref_YP_001866413.1_ (Len=627):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 7 158-220 3.15 244.87 0.03077 15.0% 13.66
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 158-220 AGLGSFVWTDLLRISGVRPDKIVALGLEAEPYARYKRLCLNSQIPLYERLRSNSDSCPDNIWG
WD40 Template TGECLRTLSG-------HTSGVTSVSFSPD----------------GKRLVSGSEDGTIKVWD