Input parameters:
Query = gi_186683222_ref_YP_001866418.1_ (Len=186)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (gi_186683222_ref_YP_001866418.1_, Len=186):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKIFTYVDNSNLFIEGRRLSAVNKRIDGVGNIYEAINLKIFDNDWYMDYGRLHEFLCGTEKSEIGGTRLWGSPPPKDTFW 80
WD40-rpts
Query 81 DYVKSKGFNVQTYERSKGKEKKVDTAIAYQIGKDSGKIIDKENDIIVIAAGDKDYMPCIDDLTSDGFKVHVAFWGHAARE 160
WD40-rpts (______________________________WD 1______________________________)
Query 161 VQEAATKFINLDPHQDYLSAIWCRPQ 186
WD40-rpts
1 WD40-repeats found in QUERY=gi_186683222_ref_YP_001866418.1_ (Len=186):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 86-151 3.08 241.83 0.03377 17.5% 29.55
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 86-151 KGFNVQTYERSKGKEKKVDTAIAYQIGKDSGKIIDKENDIIVIAAGDKDYMPCIDDLTSDGFKVHV
WD40 Template TGECLRTLSGHTSGV----------------TSVSFSPDGKRLVSGSEDG----------TIKVWD