Input parameters:

  Query = gi_186683273_ref_YP_001866469.1_ (Len=1538)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683273_ref_YP_001866469.1_, Len=1538):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSEKTGLEVAIIGLAGRFPGAKNIEEFWRNLQDGVESVKFFSDEELLAAGIEPALLSQSNYVKAGAILNDIEMFDAAFF 80  
WD40-rpts                                                                                      

Query       81 GYTPREAEILNPQHRLFLECADEALENAAYNPQTYKSPIGVYAAVGKNDYLLDNIYPNSDLIEAVGVSPILIANGDYLST 160 
WD40-rpts                                                                                      

Query      161 LVSYKLDLSGASITVQTACSSSLVAVHLACQGLLSGDCEMALAGGVSIRLPQMSGYIYQEGGIVSVDGHCRTFDAKAKGA 240 
WD40-rpts                                                                                      

Query      241 VGGNGLGIVVLKRLENAIKDGDRIYAVIKGSAINNDGAQKIGYTAPGVEGQANVILAAQATSEIAAETITYIEAHGTATP 320 
WD40-rpts                                                                                      

Query      321 LGDPIELEALTQAFRTSTAKKGFCAIGSLKTNMGHLDAAAGVAGLIKTTLALQHKVIPASLNFEQPNSKIDFANSPFYVN 400 
WD40-rpts                                                                                      

Query      401 TKLSKWDSVNTPRRSGVSSFGIGGTNAHLILEESPLLEQEDRGAEEQGRKYHLLIVSAKTDSALETMTVNLAEYLQQHPD 480 
WD40-rpts                                                                                      

Query      481 INLADVVHTLQVGRRTYNHRRMLVCRNLESAIIGLKASEPSQYLTTFQEKTQRPVTFLFPGQGSQYVNMARELYEVEPTF 560 
WD40-rpts                                                                                      

Query      561 QTEFDHCAQLLLINFGLDLHRLLYPEASVQETAQAQLQQTHLTQPALFVIEYALAKLWMSWGIKPQAMIGHSIGEYVAAC 640 
WD40-rpts                                                                  (___________________

Query      641 LAGVFSLEDGLTLVITRAKLMQELPKGAMLAVPLPESEIKPLLNEQLSLAAINAPSQCVVSGLADAIATLQNQLTKKGVD 720 
WD40-rpts      ___________________WD 1______________________________________)                  

Query      721 CRLLHTSHAFHSTMMEPICAALTEQIAEIQLHSPQIPYISNVTGTWITPSVATDPNYWTKHLRQPVLFNQGVEELLQESD 800 
WD40-rpts                                                                                      

Query      801 RVFLEVGPGRTLSTFIQQHSDKNTGITALASLRHPRDESSDVAFLQNTLGQLWLAGVEVDWSGLYIHERRQRLALPTYPF 880 
WD40-rpts                                                                                      

Query      881 ERQRYWLDAPNSAEIPSSPQLLPNKKLDISKWLYIPSWKRTVSPSRRHSSPGCTLVFSDDCGLGLGIVRQLELEGETVIT 960 
WD40-rpts                                                                                      

Query      961 LKVGSEFHQISERLYSLNPKNHQDYDTLLQELHRQGLQPQKIIHLWSVTENYTPELEIAEFDKAQETGFYSLLFLAQTLA 1040
WD40-rpts                                                                                      

Query     1041 KHHVIDELQITVVSNNVQQVTGVDIVCPAKATILGPVKVIPQEYPNITCRNIDIIIPKSSQDKLVEQIVAELTCDNLDKV 1120
WD40-rpts                                                                                      

Query     1121 IAYRGYHRLVQTFEPVQWDESVVGTPRLREKGVYLITGGLGKISLLLAEHLAKTVQGNLILIGRSPFPAKDSWEQWLVNH 1200
WD40-rpts                                                                                      

Query     1201 DHTDSISQKIQKLIEIESFGGKVLIINADVSNQQQMQAAIDLAKEKYGRVNGVIHAVAIADSFHAIEQTSYQECLQQFQP 1280
WD40-rpts                                                                                      

Query     1281 KIHGLLVLEKIFQNQKLDFCLLLSSLSSILGGLGFVAYSAANNFLDIFAHKYNPNNSIPWISINWDAWQFDSEPKITGNL 1360
WD40-rpts                                                                                      

Query     1361 AELALNPQEGIKIFQYIFSQPDVNQWVVSTGNLQARIDQWIQLKILGNRKDLKSASSITHHARPNLRNAYIAPSNEIEKC 1440
WD40-rpts                                                                                      

Query     1441 LVNIWQDLLGIEPIGIEDNFFELGGNSLTAIQIISRLREIYLIDLPVNDFFETPKIISLTETIFQAQIANADSEILAQAL 1520
WD40-rpts                                                                                      

Query     1521 ADLAKLSDEDVQKLLAAE 1538
WD40-rpts                        

1 WD40-repeats found in QUERY=gi_186683273_ref_YP_001866469.1_ (Len=1538):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   621-702      3.41  255.67  0.02210       17.5%     35.36

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  621-702    WGIKPQAMIGHSIGEYVAACLAGVFSLEDGLTLVITRAKLMQELPKGAMLAVPLPESEIKPLLNEQLSLAAINAPSQCVVSG

   WD40 Template    TGECLRTLSGHT-------------S---------------------GVTSVSFS--------PDGKRLVSGSEDGTIKVWD