Input parameters:

  Query = gi_186683388_ref_YP_001866584.1_ (Len=355)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683388_ref_YP_001866584.1_, Len=355):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLLNFLKSRPVIIVLAIAVNITVIDVHSSSSNFPIDKSTITQLQPQIQLVHTLTGHKKVTFGVRAVAISSSGQTLISAG 80  
WD40-rpts                                                     (__________________WD 1__________

Query       81 RDDTIKFWNLRTGKLLRSLDAHSDGVTSIAISPDGKRIVTGGISTPTMKVWDLRSFLMLKGDSGHTQPVETVAISSDGKL 160 
WD40-rpts      ________)   (_________________WD 2_________________)   (_________________WD 3___

Query      161 IASGSDDYTIKLWDLHTLKLLDTITTHSGFVSKVAFSPDMQTLVSAGGGDDNTIRLIDLQTKKTRHILKGHKTGVDAIAI 240 
WD40-rpts      _____________)   (__________________WD 4_________________)   (__________________

Query      241 TPDSKKLVTGSFGQLVSRNRAISTLKLWNLQTGKLLHEFADNFSSVESLVISPNGKILICGNYDGTIKMWSLETLKLLHT 320 
WD40-rpts      ___WD 5_____________________)   (_________________WD 6________________)   (_____

Query      321 SRDGSSSVLGLALSLDGKTLVSSNEDSIIHIWQIK 355 
WD40-rpts      ____________WD 7________________)  

7 WD40-repeats found in QUERY=gi_186683388_ref_YP_001866584.1_ (Len=355):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    48-89       9.11  490.85  1.5e-05       42.5%     55.34
  WD 2:  Seg  9    93-132     10.15  533.97  3.9e-06       55.0%     56.91
  WD 3:  Seg 13   136-174     10.61  553.00  2.2e-06       50.0%     57.03
  WD 4:  Seg 17   178-218      9.00  486.34  1.7e-05       42.5%     49.88
  WD 5:  Seg 21   222-269      8.65  472.18  2.7e-05       37.5%     52.74
  WD 6:  Seg 25   273-311     10.43  545.36  2.8e-06       42.5%     57.23
  WD 7:  Seg 29   315-353      9.75  517.57  6.6e-06       37.5%     55.97

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   48-89     IQLVHTLTGHKKVTFGVRAVAISSSGQTLIS--AG-RD---------DTIKFWN
   WD 2   93-132    GKLLRSLDAH---SDGVTSIAISPDGKRIVT--GGIST---------PTMKVWD
   WD 3  136-174    FLMLKGDSGH---TQPVETVAISSDGKLIAS--GS-DD---------YTIKLWD
   WD 4  178-218    LKLLDTITTH---SGFVSKVAFSPDMQTLVSAGGG-DD---------NTIRLID
   WD 5  222-269    KKTRHILKGH---KTGVDAIAITPDSKKLVT--GS-FGQLVSRNRAISTLKLWN
   WD 6  273-311    GKLLHEFADN---FSSVESLVISPNGKILIC--GN-YD---------GTIKMWS
   WD 7  315-353    LKLLHTSRDG---SSSVLGLALSLDGKTLVS--SN-ED---------SIIHIWQ

   WD40 Template    GECLRTLSGH---TSGVTSVSFSPDGKRLVS--GS-ED---------GTIKVWD