Input parameters:

  Query = gi_186683971_ref_YP_001867167.1_ (Len=352)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683971_ref_YP_001867167.1_, Len=352):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNSTTKSKEFEQHYSGTLSDYVTAIAWSPQGKTLAATSAAGEVVLWNDGELTTLQTGNGKSVDCLAFSPDGKFLAVGGQD 80  
WD40-rpts      (_____________________WD 1____________________)(_________________WD 2___________

Query       81 GQVKIWQNTELIATLENAPAWVDKLAWNYTSNQLAFSLGRYVQVWDVDTHEIVVTLNFDNSSVLGIDWRIDGQYLAISGY 160 
WD40-rpts      ______) (________________WD 3________________)   (________________WD 4__________

Query      161 KGVKIWHSQNWDEEPYSLDMTTVSLAMAWSPDGKFLASGNMDRSVTVLEWNNPDPWVMRGFPGKIRQLAWSEAMTKVGAP 240 
WD40-rpts      ______)   (_________________WD 5________________)  (___________________WD 6_____

Query      241 ILASSSVEGIVVWEKLEDDTLGWEARVLTNHVGTINAIAFAPKSFLLASAAADGWLCLWNQAKEVSQIITGVSGGFSTLA 320 
WD40-rpts      _____________)       (_________________WD 7________________)  (_________________

Query      321 WHPQGKLLAAGGEQGELVIWSKVLRGQGFGRS 352 
WD40-rpts      WD 8________________)           

8 WD40-repeats found in QUERY=gi_186683971_ref_YP_001867167.1_ (Len=352):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-47       8.13  450.51  5.3e-05       25.0%     49.84
  WD 2:  Seg  5    48-87      11.79  601.59  4.8e-07       40.0%     55.56
  WD 3:  Seg  8    89-126      6.93  401.10  0.00024       22.5%     49.63
  WD 4:  Seg 12   130-167      7.59  428.17  0.00011       25.0%     54.66
  WD 5:  Seg 16   171-209      9.02  487.28  1.7e-05       27.5%     54.75
  WD 6:  Seg 20   212-254      5.85  356.47  0.00098       17.5%     38.67
  WD 7:  Seg 24   262-300      9.37  501.67  1.1e-05       27.5%     53.03
  WD 8:  Seg 28   303-341      9.67  514.23  7.3e-06       27.5%     56.22

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-47     MNSTTKSKEFEQHYSGTLSDYVT----AIAWSPQGKTLAATSAAGEVVLWN
   WD 2   48-87     DGELTT-------LQTGNGKSVD----CLAFSPDGKFLAVGGQDGQVKIWQ
   WD 3   89-126    -TELIA-------TLENAPAWVD----KLAWNYTSNQLAF-SLGRYVQVWD
   WD 4  130-167    -HEIVV-------TLNFDNSSVL----GIDWRIDGQYLAISG-YKGVKIWH
   WD 5  171-209    -WDEEP-------YSLDMTTVSL----AMAWSPDGKFLASGNMDRSVTVLE
   WD 6  212-254    -NPDPW-------VMRGFPGKIRQLAWSEAMTKVGAPILASSSVEGIVVWE
   WD 7  262-300    -GWEAR-------VLTNHVGTIN----AIAFAPKSFLLASAAADGWLCLWN
   WD 8  303-341    -KEVSQ-------IITGVSGGFS----TLAWHPQGKLLAAGGEQGELVIWS

   WD40 Template    TGECLR-------TLSGHTSGVT----SVSFSPDGKRLVSGSEDGTIKVWD