Input parameters:

  Query = gi_186684120_ref_YP_001867316.1_ (Len=335)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684120_ref_YP_001867316.1_, Len=335):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAVALPVTIWQGFYIHQAHAAVEVTPNSPTTNSFANAQLLYTLRGHNGTVKSLAFSPDSRILASGGAENEGIIRLWNPA 80  
WD40-rpts                                           (__________________WD 1_________________)  

Query       81 NGKKLADINKAHKAAVESLVISPDGQTLASCSDDNTINLWNLKNFKFSRSFVGHTSNVLSLAVSPDSKVLISGALDGIRL 160 
WD40-rpts       (_________________WD 2_________________)   (________________WD 3_______________

Query      161 WDLLQQRPLGTLVRFDNLIYTLAISPDGQTLASGDSKGVIKVWSLSTGKLISEFVAHSNVVSAVIFTPDGQTLVSASRDR 240 
WD40-rpts      _)   (_________________WD 4________________)   (_________________WD 5___________

Query      241 TVKLWNINTGELVRTLTGHNNWVNAIAINPDGQTLASAGKDGIKVWNLTTGELINTLNGHTDWVSAIAFSPNGKILASGG 320 
WD40-rpts      _____)   (________________WD 6________________)   (_________________WD 7________

Query      321 FDRQIKIWGTPQKRN 335 
WD40-rpts      ________)      

7 WD40-repeats found in QUERY=gi_186684120_ref_YP_001867316.1_ (Len=335):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    38-78       9.19  494.49  1.3e-05       42.5%     54.95
  WD 2:  Seg  8    82-121      9.07  489.39  1.6e-05       40.0%     56.19
  WD 3:  Seg 12   125-162      9.07  489.41  1.6e-05       47.5%     54.40
  WD 4:  Seg 16   166-204      9.97  526.56  5.0e-06       37.5%     54.51
  WD 5:  Seg 20   208-246     10.52  549.06  2.5e-06       40.0%     56.33
  WD 6:  Seg 24   250-287      9.44  504.80  9.8e-06       45.0%     54.84
  WD 7:  Seg 28   291-329     10.92  565.73  1.5e-06       50.0%     52.69

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   38-78     AQLLYTL-RGHNGTVKSLAFSPDSRILASGGAENEGIIRLWN
   WD 2   82-121    GKKLADINKAHKAAVESLVISPDGQTLASCSDD--NTINLWN
   WD 3  125-162    FKFSRSF-VGHTSNVLSLAVSPDSKVLISGALD--G-IRLWD
   WD 4  166-204    QRPLGTL-VRFDNLIYTLAISPDGQTLASGDSK--GVIKVWS
   WD 5  208-246    GKLISEF-VAHSNVVSAVIFTPDGQTLVSASRD--RTVKLWN
   WD 6  250-287    GELVRTL-TGHNNWVNAIAINPDGQTLASAGKD---GIKVWN
   WD 7  291-329    GELINTL-NGHTDWVSAIAFSPNGKILASGGFD--RQIKIWG

   WD40 Template    GECLRTL-SGHTSGVTSVSFSPDGKRLVSGSED--GTIKVWD