Input parameters:

  Query = gi_186684531_ref_YP_001867727.1_ (Len=641)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684531_ref_YP_001867727.1_, Len=641):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFLQERYRLLKPIGKGGFCKTFLAVDEDQFPPIPCVVQEISQEYETFKTFQQKAQQLEELGKHPQIPALLAYFQQDGHFY 80  
WD40-rpts                                                                                      

Query       81 LVQEFIAGTNLAQVVEEEGAFNEIQIWQLLEDVLPVLQFISDRHIIHRDIKPQNIIRRSPITKKGNFVIVDFTTAKIVTE 160 
WD40-rpts                                                                                      

Query      161 IDRLTSETSIGSPEYAAPEQAKGKAVFASDLYSLGVTCIYLLTQIPPFDLYDIANDCWVWQQYLTTKVSDVWRQDSKSLR 240 
WD40-rpts                                                                                      

Query      241 LAQILDKLLQKTINRRFQSADEVMQAMGMECKTQNFKLPNPPWRCLHTLTGHSGTLSSVNALAISPDSHTLASGSDDKNI 320 
WD40-rpts                                                (__________________WD 1_______________

Query      321 KLWDLNTKKVLANLSGHSQAVKSVAFSPDGQILATASDDKTIKLWQFDTLKEICTLLGHSHAVKSVAFSPDGQILASGSW 400 
WD40-rpts      ___)   (_________________WD 2________________)   (_________________WD 3_________

Query      401 DKTIKLWDVNTGTEICTITGHQLQVNSVAFSPQGQLLASASYDRTIRLWQIPVLGRVRGAGSRLAVSVDEREQGDMNSAE 480 
WD40-rpts      _______)   (_________________WD 4________________)        (_________________WD 5

Query      481 LKDYSQGAEDIPLTPYPLPPAPFPLVQNRPCYSLLSTLSGHAWAVLTVAFSPDGKMLATGSDDNTIKLWEVNTGQLICTL 560 
WD40-rpts      ________________)              (_________________WD 6________________)   (______

Query      561 VGHSWSVVAVAFTADGETLLSASCDKTVKLWRVSTAEEIVTLSGHVDSVSAVAVSKVTQLIASASRDRTIKLWQLVEQDN 640 
WD40-rpts      ___________WD 7________________)   (_________________WD 8________________)      

Query      641 S 641 
WD40-rpts       

8 WD40-repeats found in QUERY=gi_186684531_ref_YP_001867727.1_ (Len=641):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   283-324      7.25  414.17  0.00016       50.0%     40.55
  WD 2:  Seg 15   328-366     10.60  552.53  2.2e-06       50.0%     53.49
  WD 3:  Seg 19   370-408     10.88  563.92  1.6e-06       55.0%     55.63
  WD 4:  Seg 23   412-450     10.45  546.34  2.7e-06       45.0%     57.55
  WD 5:  Seg 28   459-497      6.81  395.86  0.00029       15.0%     35.60
  WD 6:  Seg 32   512-550     10.25  538.19  3.5e-06       55.0%     51.03
  WD 7:  Seg 36   554-592     10.42  545.21  2.8e-06       42.5%     56.15
  WD 8:  Seg 40   596-634     10.03  529.15  4.6e-06       40.0%     50.43

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  283-324    -WRCLHTLTGHSGTLSSVNALAISPDSHTLASGSDDKNIKLWD
   WD 2  328-366    -KKVLANLSGHS---QAVKSVAFSPDGQILATASDDKTIKLWQ
   WD 3  370-408    -LKEICTLLGHS---HAVKSVAFSPDGQILASGSWDKTIKLWD
   WD 4  412-450    -GTEICTITGHQ---LQVNSVAFSPQGQLLASASYDRTIRLWQ
   WD 5  459-497    GAGS-RLAVSVD---EREQGDMNSAELKDYSQGAEDIPLTPYP
   WD 6  512-550    -YSLLSTLSGHA---WAVLTVAFSPDGKMLATGSDDNTIKLWE
   WD 7  554-592    -GQLICTLVGHS---WSVVAVAFTADGETLLSASCDKTVKLWR
   WD 8  596-634    -AEEIVTLSGHV---DSVSAVAVSKVTQLIASASRDRTIKLWQ

   WD40 Template    TGECLRTLSGHT---SGVTSVSFSPDGKRLVSGSEDGTIKVWD