Input parameters:

  Query = gi_186684886_ref_YP_001868082.1_ (Len=1210)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684886_ref_YP_001868082.1_, Len=1210):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRYQVGGSLRSDDPTYIIRDADEKLYTSLKAGDFCYVFNSRQMGKSSLLQRTSYRLKEEGYSCVYLDMTILGIEDTTPEQ 80  
WD40-rpts                                                                                      

Query       81 WYKGIIISLFYSLNLAEQINFKGWWETQKGISSVQKLHCFVEEVLLPNAKAERIFIFIDEIDSLLSLSFPINDFFAWIRQ 160 
WD40-rpts                                                                                      

Query      161 CYNQRPENSNFNRLGFALFGVASPSDLIADKGRTPFNLGKAIELHGFQLYEATPLLQGVKEVVSQPQAILQEIIHWTEGQ 240 
WD40-rpts                                                                                      

Query      241 PFLTQKLCNLVIQIAAENATGMISLIPGTEAFWIEQLVKTHIIQNWQSQDEPEHLRTIRDRLLFNDQRAGRLLGIYQKVL 320 
WD40-rpts                                                                                      

Query      321 QAEEQFSSGGFPQKEMSSSRGEEFFTLPHLPVPIDDSREQTELLLSGLVEKHNGYLKIKNPIYRSVFNTEWVLKQLDNLR 400 
WD40-rpts                                                                                      

Query      401 PYSQTFNAWVASGYKDESRLLRGQALRDTQNWIQGKSLSDWDYQFLAASQECEQREVQTALEAARAKEVEARLAQEQKTA 480 
WD40-rpts                                                                                      

Query      481 KFQRFLLVAVCIGLLVSSILGVGSFIMYRQTKKSESQAKSSEIRALVSSSAGLFASQRRLDALVEAIKAKDRLHKLGTTN 560 
WD40-rpts                                                                                      

Query      561 SNLAPQVENALRQAVYGADEYNRFSDHTASVMAVDVSPDSSLIASASIDNTVKLWRRDGTEVATLKGHKGAVRAVDFSSN 640 
WD40-rpts                     (__________________WD 1_________________)  (_________________WD 2

Query      641 GQILASAGEDGTIKLWKLDGTLLKTFKGHTASVWGIAFSPDGQFIASASWDATVKLWKRDGTLLKTFQGSKGAFWGVAFS 720 
WD40-rpts      ________________)  (_________________WD 3________________)  (_________________WD

Query      721 PDGQTIAAASLDRTVKLWKRDDSGWQNAKPVQTLQGHTAWVVGVAFSPDGQTIASASEDRTVKLWRRDSISKSYRLDKTL 800 
WD40-rpts       4________________)        (_________________WD 5________________)        (_____

Query      801 QGHDAGISGVAFSPDGQTIASASLDKTIKLWNIDGTQLRTLRGHSASVWGVTFSPDGSFIASAGAENVVRLWQSQNPFQK 880 
WD40-rpts      ___________WD 6________________)  (_________________WD 7________________)  (____

Query      881 SIVAHKAGIWSIAIASDSSTIATTSHENMVKFWSSQGKLLKTLTESKGEVSEVSFSGDDNLIALFTSDDTVKIKKRDGTL 960 
WD40-rpts      _____________WD 8________________)  (_________________WD 9________________)  (__

Query      961 IASYKSHHSKLTSGVFSPDGQTIAMAGVDKNVQISRRDRLWPGVAHRAATLQILKGHQAEVWHVVFSPDGKLVASASGDN 1040
WD40-rpts      _______________WD10________________)           (_________________WD11___________

Query     1041 TAKLWTLDGNLFRTLVGHSAAVWRVVFSQDSKMLATGSGDNTVKLWTLDGKLLNTFKGHKAGIWGIAFTPDGKIVASGSV 1120
WD40-rpts      _____)  (_________________WD12________________)  (_________________WD13_________

Query     1121 DASIKLWKLDGTEVTTLTGHTAAIRVVAISPDGTLLVSGGDDNTLILWNLQRILNLDVLNYGCTLVQDYLKTNTTVEEGD 1200
WD40-rpts      _______)  (_________________WD14________________)                               

Query     1201 RSLCNMPKFK 1210
WD40-rpts                

14 WD40-repeats found in QUERY=gi_186684886_ref_YP_001868082.1_ (Len=1210):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   576-616      8.58  469.01  3.0e-05       37.5%     51.19
  WD 2:  Seg 14   619-657      9.95  525.84  5.1e-06       47.5%     57.85
  WD 3:  Seg 18   660-698     10.27  539.01  3.4e-06       45.0%     56.77
  WD 4:  Seg 22   701-739      9.66  513.78  7.4e-06       37.5%     54.85
  WD 5:  Seg 26   748-786      9.87  522.29  5.7e-06       47.5%     55.61
  WD 6:  Seg 30   795-832      9.89  523.04  5.5e-06       45.0%     48.69
  WD 7:  Seg 33   835-873      9.86  522.03  5.7e-06       40.0%     54.28
  WD 8:  Seg 37   876-914      8.26  455.99  4.4e-05       17.5%     51.00
  WD 9:  Seg 41   917-955      8.80  478.22  2.2e-05       32.5%     54.90
  WD10:  Seg 45   958-996      8.79  477.83  2.3e-05       27.5%     52.46
  WD11:  Seg 49  1008-1046     9.15  492.61  1.4e-05       45.0%     55.43
  WD12:  Seg 53  1049-1087    10.16  534.36  3.9e-06       47.5%     54.43
  WD13:  Seg 57  1090-1128    10.34  541.63  3.1e-06       45.0%     55.18
  WD14:  Seg 61  1131-1169     9.95  525.62  5.1e-06       45.0%     56.06

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  576-616    YGADEYNRFSDHTASVMAVDVSPDSSLIASASIDNTVKLWR
   WD 2  619-657    -G-TEVATLKGHKGAVRAVDFSSNGQILASAGEDGTIKLWK
   WD 3  660-698    -G-TLLKTFKGHTASVWGIAFSPDGQFIASASWDATVKLWK
   WD 4  701-739    -G-TLLKTFQGSKGAFWGVAFSPDGQTIAAASLDRTVKLWK
   WD 5  748-786    -A-KPVQTLQGHTAWVVGVAFSPDGQTIASASEDRTVKLWR
   WD 6  795-832    ---RLDKTLQGHDAGISGVAFSPDGQTIASASLDKTIKLWN
   WD 7  835-873    -G-TQLRTLRGHSASVWGVTFSPDGSFIASAGAENVVRLWQ
   WD 8  876-914    -N-PFQKSIVAHKAGIWSIAIASDSSTIATTSHENMVKFWS
   WD 9  917-955    -G-KLLKTLTESKGEVSEVSFSGDDNLIALFTSDDTVKIKK
   WD10  958-996    -G-TLIASYKSHHSKLTSGVFSPDGQTIAMAGVDKNVQISR
   WD11 1008-1046   -A-ATLQILKGHQAEVWHVVFSPDGKLVASASGDNTAKLWT
   WD12 1049-1087   -G-NLFRTLVGHSAAVWRVVFSQDSKMLATGSGDNTVKLWT
   WD13 1090-1128   -G-KLLNTFKGHKAGIWGIAFTPDGKIVASGSVDASIKLWK
   WD14 1131-1169   -G-TEVTTLTGHTAAIRVVAISPDGTLLVSGGDDNTLILWN

   WD40 Template    TG-ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD