WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: gi_186684904_ref_YP_001868100.1_ [Nostoc punctiforme PCC 73102] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = gi_186684904_ref_YP_001868100.1_ (Len=1683) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (gi_186684904_ref_YP_001868100.1_, Len=1683): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTTDKQLHVYTKENQHSLQRLMRAIALSEGQFALILVRCNYGQLREQMLENIRSITKDINIREIVLNSSTTSLHNTIVSE 80
WD40-rpts
Query 81 LSLDNPAVLTDSLPAAVMVFGIESAIDLENLLTGINQARDIYAATFPFPVVLWLQDEVASLLSRLAPDFKSWAATTIKFE 160
WD40-rpts
Query 161 MAKADLIALIHQEAESLFAKVLEAGAETFLSNASLDLDPKSQHRHEIESARNDLLRLYGIQLTPGLEASLEFVLGRDKYA 240
WD40-rpts
Query 241 NDQINGALGNYQRSLALWQQETKRVAELESNSSLPLSCPHPTPPSPLLKQAIVLFHLGLCYHRMADLHHNSNSRYCEHAL 320
WD40-rpts
Query 321 LWFQQCLDVLEEVQREDLVAKFILPACEMLQRLQAWDDLKKLAQKSLLIHKIYGTPAQIAQNYGFLANVAVSESNWVLAH 400
WD40-rpts
Query 401 ELANAALSISEEATEVSLRDALRTRRQESWHLLLLARTQRHLGESEEAINNLEWARVVCELQHQPSLYLEILEELRSLYF 480
WD40-rpts
Query 481 FERHNYTEAFKLKQEKIQIEHQYGFRAFIGASQLQPQRSRINPVLEPQKIPFIPEGVAQEISASGRQQDVNRLIERISRA 560
WD40-rpts
Query 561 DYKLTVIYGPSGVGKSSILKAGLVPALTGKVIGERIPIPIVLSVYTDWLTVLISSLNQALAYTGISVNSDSTSSILLEKI 640
WD40-rpts
Query 641 RLATERNYTIILILDQFEELFFISNPPTQRIEFYQLFSGCLNISFVKIILSLREDYLHHLLEFERLSQKNSIGLYDLGVI 720
WD40-rpts
Query 721 NKNILDKDIRYYLGKFSSQDAKAIIQSLTQRSHYELSDELINRLVQDLTGELDEVHPIELQIVGAQLQIENITTLGEYKL 800
WD40-rpts
Query 801 CGGSAKLVERWLGEVIEDCGPENEELSWKLLFELTDEKGTRPLKSKADLAAALVNNHDIDTISSFDIVGELILEILVGSG 880
WD40-rpts
Query 881 LVLRVREELGDRYQLVHDYLVEPIRQKNNYGMLAEFEKIKLEKIRAEVAQQLSQKQLNLVLQRRLREARFVGAMLAIMGG 960
WD40-rpts
Query 961 TIAALWWQADLQKTAAIHQTLRAERSETNLRISGITAASEALFASNKEFDALLESLRAWRELKQADGVQPDTRMRVVTAL 1040
WD40-rpts
Query 1041 QQAVYGVTEVNRLEGHTDIVWGVTFSPDGQTLASGSRDRTVKIWHPDGTLLQTLKGHTDAVTSVSFSPDGQTLASASLDK 1120
WD40-rpts (__________________WD 1_________________) (_________________WD 2___________
Query 1121 TVQIWNKNPITGEFDLKPYKTLRGHKDWVYSVNFSPDGELLATASKDTTIKLWRKDGTLVKILRGHRGWVNWVNFSPDGQ 1200
WD40-rpts _____) (_________________WD 3________________) (_________________WD 4__
Query 1201 LIASSSDDKTVKIWRRDGSLVTTLQGHQQGVTVAVFSPDGKFLASAGRDKTVKLWRRENNNTKDSFDFRLYKNLRQHSST 1280
WD40-rpts ______________) (_________________WD 5________________) (____________
Query 1281 VWSVSFSSDSKKLASAGEDNTINLWSVTGTLLKTFKGHSDAVVTIAFSPNNKLLASGSFDKSVKLWSLNAPTPPTLQGHQ 1360
WD40-rpts _____WD 6________________) (_________________WD 7________________) (__________
Query 1361 DRVLSVTWSPNGQMLASGSSDRTVKLWKKYTSNGEFKTRLYKTLVGHTSKVPSVSFDPKGKMLASGSYDKTVKLWRLDGT 1440
WD40-rpts _______WD 8________________) (_________________WD 9________________) (_
Query 1441 LIMTLHGHRDSVMSVNFSPDGQFLASASKDKTVKLWNRQGKLLKTLMGHQGWVNSVNFSPDSQILASASDDQTVKLWNRE 1520
WD40-rpts ________________WD10________________) (_________________WD11________________)
Query 1521 GKLLKTFSPHDSWVLGVSFSPTDELLASASWDNTVKLWRRDGTLLKTLLKGYSDSVNAVTFSPNGELLAAASWDSTVKLW 1600
WD40-rpts (_________________WD12________________) (_________________WD13________________
Query 1601 SHEGKLIKSLNGHRAPVLSVSFSPDGQTLASASDDNTIILWNLNLDDLLVRGCDWVGDYLKHNRNLEERDRFLCNGIPTK 1680
WD40-rpts ) (_________________WD14________________)
Query 1681 NSF 1683
WD40-rpts
 14 WD40-repeats found in QUERY=gi_186684904_ref_YP_001868100.1_ (Len=1683): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 12 1045-1085 9.51 507.37 9.0e-06 50.0% 54.18 WD 2: Seg 16 1088-1126 10.81 561.25 1.7e-06 57.5% 55.95 WD 3: Seg 20 1136-1174 9.72 516.27 6.8e-06 47.5% 48.38 WD 4: Seg 23 1177-1215 10.24 537.46 3.5e-06 42.5% 56.41 WD 5: Seg 27 1218-1256 10.52 549.34 2.5e-06 50.0% 56.78 WD 6: Seg 31 1268-1306 9.03 487.55 1.7e-05 45.0% 47.76 WD 7: Seg 34 1309-1347 10.29 539.89 3.3e-06 42.5% 54.52 WD 8: Seg 38 1350-1388 9.65 513.45 7.5e-06 45.0% 47.73 WD 9: Seg 41 1398-1436 9.58 510.31 8.2e-06 55.0% 44.80 WD10: Seg 44 1439-1477 10.18 535.10 3.8e-06 50.0% 55.75 WD11: Seg 48 1480-1518 10.42 545.21 2.8e-06 50.0% 54.53 WD12: Seg 52 1521-1559 9.85 521.47 5.8e-06 47.5% 56.40 WD13: Seg 56 1563-1601 9.54 508.93 8.6e-06 35.0% 57.28 WD14: Seg 60 1604-1642 10.29 539.72 3.3e-06 50.0% 54.43Multiple sequence alignment of 14 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1045-1085 YGVTEVNRLEGHTDIVWGVTFSPDGQTLASGSRDRTVKIWH WD 2 1088-1126 -G-TLLQTLKGHTDAVTSVSFSPDGQTLASASLDKTVQIWN WD 3 1136-1174 -L-KPYKTLRGHKDWVYSVNFSPDGELLATASKDTTIKLWR WD 4 1177-1215 -G-TLVKILRGHRGWVNWVNFSPDGQLIASSSDDKTVKIWR WD 5 1218-1256 -G-SLVTTLQGHQQGVTVAVFSPDGKFLASAGRDKTVKLWR WD 6 1268-1306 -F-RLYKNLRQHSSTVWSVSFSSDSKKLASAGEDNTINLWS WD 7 1309-1347 -G-TLLKTFKGHSDAVVTIAFSPNNKLLASGSFDKSVKLWS WD 8 1350-1388 -A-PTPPTLQGHQDRVLSVTWSPNGQMLASGSSDRTVKLWK WD 9 1398-1436 -T-RLYKTLVGHTSKVPSVSFDPKGKMLASGSYDKTVKLWR WD10 1439-1477 -G-TLIMTLHGHRDSVMSVNFSPDGQFLASASKDKTVKLWN WD11 1480-1518 -G-KLLKTLMGHQGWVNSVNFSPDSQILASASDDQTVKLWN WD12 1521-1559 -G-KLLKTFSPHDSWVLGVSFSPTDELLASASWDNTVKLWR WD13 1563-1601 -T-LLKTLLKGYSDSVNAVTFSPNGELLAAASWDSTVKLWS WD14 1604-1642 -G-KLIKSLNGHRAPVLSVSFSPDGQTLASASDDNTIILWN WD40 Template TG-ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |