Input parameters:

  Query = gi_186684925_ref_YP_001868121.1_ (Len=744)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684925_ref_YP_001868121.1_, Len=744):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKSVINASLSTQNLTFRPGDTPVSFEVTVNNDSDRFVNFQVEITAAGETRNTGYRWYRLEPEVAAAKPPGSSTIFQVFI 80  
WD40-rpts                                                                                      

Query       81 FNTPISGFVGTVNLMVNIFSPQLAQQCRLVLRLKIERDNRPTHLSVELPVREFQVYPRNSVDIPVRVRNLGQQPTDVGLH 160 
WD40-rpts                                                                                      

Query      161 FTGVEPSWLAGSAERRLSLDPGGLAEATFQCQPPSVVQAPSQNYPFTIEAVSNNGYPTSAEGNIEVLPVGFIDFTTTQKH 240 
WD40-rpts                                                           (__________________WD 1____

Query      241 LKIPSKSVWLPDWKSDTASFELLFKNASNLNQQINVQVQGRDWRKCTFKKLPENANLHLGETSKVILDVKTKRPWVGIGK 320 
WD40-rpts      _____________)   (_________________WD 2________________)                        

Query      321 TLLLEAKSELSDQRLGSTDPATQTLEVEALAIIPLWLQLAAIALLAALLALILQPRDIMHTRSVNSIRFSGIGLSVVSGS 400 
WD40-rpts             (____________________WD 3___________________)(________________WD 4_______

Query      401 DDCTLRLWRIAADSLNPDDTVTYAGQPVACDQRQQPKGLMAITDDAVEVLRFMPLQNDRVAVGLDNGVIELRDVPSGLKI 480 
WD40-rpts      ________)                        (_________________WD 5_________________)       

Query      481 SELQDLKDPKAKGDRVFDLAFTSNSLNLFSGYGSGKVRVWSRTAPNSDFLPEPQVIDVQSTLKLSGFQVRALNLNPDAKT 560 
WD40-rpts         (________________WD 6________________)              (_________________WD 7___

Query      561 LVIAGNFKRFILWQWNPTQSDKKFPGLSVQNLEKLDPLVGREDYIWGLAFVPNSTEKILATSDSAGFITIWNLNQCQTLK 640 
WD40-rpts      _____________)                 (__________________WD 8_________________)        

Query      641 NPNPQEKINELNCSPIDRWPASKTSVRSLAFSDDGGLLVSGGDDGRVVLWYLTPEHKLDKIKAAEGKTIYQSSKKINSID 720 
WD40-rpts                  (_________________WD 9________________)           (_________________

Query      721 LKTNQGTMIVSGGEDFQVKLHRIK 744 
WD40-rpts      WD10_________________)  

10 WD40-repeats found in QUERY=gi_186684925_ref_YP_001868121.1_ (Len=744):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   214-254      5.52  342.81  0.00149       17.5%     20.16
  WD 2:  Seg 18   258-296      2.95  236.31  0.03994        2.5%     24.34
  WD 3:  Seg 23   328-372      5.60  345.97  0.00135       12.5%     42.93
  WD 4:  Seg 26   373-409      8.79  477.88  2.3e-05       35.0%     40.76
  WD 5:  Seg 29   434-473      5.28  332.63  0.00205       20.0%     49.93
  WD 6:  Seg 34   484-521      8.24  454.98  4.6e-05       22.5%     39.88
  WD 7:  Seg 37   536-574      7.40  420.50  0.00013       22.5%     51.22
  WD 8:  Seg 41   592-632      6.50  383.10  0.00043       27.5%     51.29
  WD 9:  Seg 45   653-691      8.07  447.85  5.7e-05       32.5%     44.14
  WD10:  Seg 47   703-742      5.92  359.24  0.00090       22.5%     47.69

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  214-254    -NGYPTSA-----EGNIEVLPVGFIDFTT-T-Q--KHLKIPSKSVWLPDWK
   WD 2  258-296    -ASFELLF-----KNASN--LNQQINVQV-Q-G--RDWRKCTFKKLPENAN
   WD 3  328-372    SELSDQRLGSTDPATQTL--EVEALAIIP-L-W--LQLAAIALLAALLALI
   WD 4  373-409    ---LQPRD-----IMHTR--SVNSIRFSG-I-G--LSVVSGSDDCTLRLWR
   WD 5  434-473    -QQPKGLM-----AITDD--AVEVLRFMPLQ-N--DRVAVGLDNGVIELRD
   WD 6  484-521    --QDLKDP-----KAKGD--RVFDLAFTS-N-S--LNLFSGYGSGKVRVWS
   WD 7  536-574    -IDVQSTL-----KLSGF--QVRALNLNP-D-A--KTLVIAGNFKRFILWQ
   WD 8  592-632    -LEKLDPL-----VGRED--YIWGLAFVP-N-STEKILATSDSAGFITIWN
   WD 9  653-691    -CSPIDRW-----PASKT--SVRSLAFSD-D-G--GLLVSGGDDGRVVLWY
   WD10  703-742    -AAEGKTI-----YQSSK--KINSIDLKT-NQG--TMIVSGGEDFQVKLHR

   WD40 Template    TGECLRTL-----SGHTS--GVTSVSFSP-D-G--KRLVSGSEDGTIKVWD