Input parameters:

  Query = gi_186685368_ref_YP_001868564.1_ (Len=1181)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685368_ref_YP_001868564.1_, Len=1181):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTLQNWRRKRGVALTTKGLQKIKAAKHQSEAKENFGNRYTLEEMSARSGLYSATISKVLNREGGVDKQTIEKLFSAFNLK 80  
WD40-rpts                                                                                      

Query       81 IDKNDYLSSINRLDWGEAIFNSAFYGRTEELTTLEEWILNEHCRLVSLLGIGGIGKTTLSIKLAQQIQDNFEYVIWRSLR 160 
WD40-rpts                                                                                      

Query      161 EAPPITIILSNLIQFLSDEQETESNLPENFSDKVSRLLYYLQNHRCLVILDNAESILRSGSRAGLYREGYEEYGELFRRI 240 
WD40-rpts                                                                                      

Query      241 GEATHQSCLILTSREKPKEVALLEGQAIPVRSLPLSGLKIAEGQEILKLKGLSAVEDEWKVMIERYGGNPLALKIVATTI 320 
WD40-rpts                                                                                      

Query      321 KDIFGGNVTEFLQQDTAVFGDIRDVLEQQFERLSDLEKDIMYWLAINRESVTLSELREDIISPVAQSKLLEAVESLGRRS 400 
WD40-rpts                                                                                      

Query      401 LIEKATPTLIGKTGLLFTLQPVVMEYVTSSLIEQVCEEILTQNIYLFRSKALTKATAKEYVRDTQIRFIIKPVIDGLLTA 480 
WD40-rpts                                                                                      

Query      481 FRSKKNLENHLAQILTTLREISPLEQSYTAGNVFNLLYHLETDLSSYDFSYLTIWQADLQHIKLHNVNFAYAHLAKCVFI 560 
WD40-rpts                                                                        (_____________

Query      561 ETFGGIFSVAFSPNGKLLATGDTNGEIRLYEVANSQQLMTCKGHTGWVWSVTFSPDGQVLASGSNDQTIKLWDISNGQCL 640 
WD40-rpts      _______WD 1___________________)   (_________________WD 2________________)   (___

Query      641 KTLEGHSGGVRSVTFNPDSQLLASGSDDQTVKLWNISTGKCLKTLQENGCSIWSVAFNPKGDVLASGNDDYKVRLWDINS 720 
WD40-rpts      ______________WD 3________________)   (_________________WD 4________________)   

Query      721 NSCIHTLEGHTQRVYSVCFSPDGNTIASASHDQTVKLWDTSTGKYIKTLQGHTDLVHSVTFSVDGSALVSCGDDQTVRVW 800 
WD40-rpts      (_________________WD 5________________)   (_________________WD 6________________

Query      801 DFVSGQCLKTLQGHKSRVWSLAICINQNICASSSDDQTVKLWNMSTGRCIKTFQGYNNGIWSVAVSPTDNNILASGSNDQ 880 
WD40-rpts      )   (_________________WD 7________________)   (_________________WD 8____________

Query      881 TVTLWDITAGKCIKTLREHGRRVTSVGFSPDAHLLASGSEDQTVRLWDLSTSKCLKILKGHSNRVTSVTFSADSYFLASG 960 
WD40-rpts      _____)   (_________________WD 9________________)   (_________________WD10_______

Query      961 SDDQTIRIWDITTGQCLNALREHSGRTWSVTFSPDSHVLASGSHDQTVKLWDVRTGRCLHTLQGHTEWVWGVAFSPNGGM 1040
WD40-rpts      _________)   (_________________WD11________________)   (_________________WD12___

Query     1041 LASGSGDQTIKLWDVSTGQCIRTLQDHTNTVYSVAFSSDGRILASGSGDQTVKLWDVNTGSCLRTLLGHTRWVWSVTFRS 1120
WD40-rpts      _____________)   (_________________WD13________________)   (_________________WD1

Query     1121 DDQTVVSCSEDETIKIWDVQTGECLKTLKSKNPYEGMNITSISGLTESQKDTLKALGAVEY 1181
WD40-rpts      4________________)                                           

14 WD40-repeats found in QUERY=gi_186685368_ref_YP_001868564.1_ (Len=1181):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   547-591      6.73  392.63  0.00032       30.0%     49.08
  WD 2:  Seg 12   595-633     10.25  538.08  3.5e-06       57.5%     57.70
  WD 3:  Seg 16   637-675     11.12  573.81  1.1e-06       55.0%     58.63
  WD 4:  Seg 20   679-717      9.98  527.07  4.9e-06       40.0%     57.83
  WD 5:  Seg 24   721-759     10.66  554.87  2.1e-06       52.5%     58.36
  WD 6:  Seg 28   763-801     10.51  548.68  2.5e-06       52.5%     58.68
  WD 7:  Seg 32   805-843      9.63  512.55  7.7e-06       40.0%     58.25
  WD 8:  Seg 36   847-886      8.94  484.00  1.9e-05       45.0%     55.52
  WD 9:  Seg 40   890-928     10.46  546.74  2.7e-06       55.0%     55.28
  WD10:  Seg 44   932-970     10.45  546.51  2.7e-06       52.5%     57.23
  WD11:  Seg 48   974-1012    10.35  542.00  3.1e-06       50.0%     55.40
  WD12:  Seg 52  1016-1054    10.85  562.95  1.6e-06       60.0%     57.99
  WD13:  Seg 56  1058-1096    10.91  565.21  1.5e-06       57.5%     59.01
  WD14:  Seg 60  1100-1138    10.64  553.98  2.1e-06       60.0%     56.72

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  547-591    VNFAYAHLAKCVFIETFGGIFSVAFSP-NGKLLATGDTNGEIRLYE
   WD 2  595-633    -SQQLM-----TCKGHTGWVWSVTFSP-DGQVLASGSNDQTIKLWD
   WD 3  637-675    -GQCLK-----TLEGHSGGVRSVTFNP-DSQLLASGSDDQTVKLWN
   WD 4  679-717    -GKCLK-----TLQENGCSIWSVAFNP-KGDVLASGNDDYKVRLWD
   WD 5  721-759    -NSCIH-----TLEGHTQRVYSVCFSP-DGNTIASASHDQTVKLWD
   WD 6  763-801    -GKYIK-----TLQGHTDLVHSVTFSV-DGSALVSCGDDQTVRVWD
   WD 7  805-843    -GQCLK-----TLQGHKSRVWSLAICI-NQNICASSSDDQTVKLWN
   WD 8  847-886    -GRCIK-----TFQGYNNGIWSVAVSPTDNNILASGSNDQTVTLWD
   WD 9  890-928    -GKCIK-----TLREHGRRVTSVGFSP-DAHLLASGSEDQTVRLWD
   WD10  932-970    -SKCLK-----ILKGHSNRVTSVTFSA-DSYFLASGSDDQTIRIWD
   WD11  974-1012   -GQCLN-----ALREHSGRTWSVTFSP-DSHVLASGSHDQTVKLWD
   WD12 1016-1054   -GRCLH-----TLQGHTEWVWGVAFSP-NGGMLASGSGDQTIKLWD
   WD13 1058-1096   -GQCIR-----TLQDHTNTVYSVAFSS-DGRILASGSGDQTVKLWD
   WD14 1100-1138   -GSCLR-----TLLGHTRWVWSVTFRS-DDQTVVSCSEDETIKIWD

   WD40 Template    TGECLR-----TLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD