Input parameters:

  Query = gi_186685825_ref_YP_001869021.1_ (Len=631)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685825_ref_YP_001869021.1_, Len=631):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVWNAGKSLFGGRYIIESQLGEGGLGITYLARNQRNQLRVIKTLKEEILNHPAWILHRNKLRQDFRDEAVRLAVCHHPHI 80  
WD40-rpts                                                                                      

Query       81 VEIETIFDDGNLPCMVMEYIEGEDLGQYLRRVGVLSEAEALLYIRQIGDALTLIHSKGLLHRDLKPRNIMIRIDKSEAVL 160 
WD40-rpts                                                                                      

Query      161 IDFGIAREFIPNVIQRHTVYRTPGFAPPEQYESEAPRGEYIDIYALAATLYNLLTAVIPTSADDRRHNINLEPPQYFNPN 240 
WD40-rpts                                                                                      

Query      241 ISNRVNQAIMCGMDLESTYRPQSVQEWLDLLGPENEKKIAPATSTLVITPRVKLPPPVVLDQQNWQCLQTLRGHSSMVHA 320 
WD40-rpts                                                                      (_______________

Query      321 IAISPDGQFIASGSNDHTIKLWQLGTGKLVRQMGRWSSGHSSMVNSVAFSPISAKLSYQGESGKSTGSADLNWGMLASGS 400 
WD40-rpts      __WD 1________________)(____________________WD 2____________________)(_______WD 

Query      401 WDNTIKLWDINTGKEIRTLTGHTNWVNSVAFSPDGKFLVSGSADCTIKLWQVNTGIEIQTLTGHSDSVSSIAYSPRTATT 480 
WD40-rpts      3_______)   (_________________WD 4________________)   (_____________________WD 5

Query      481 TNSQDRQLVASGSNDYTIKLWQVYTGRNIYTLTGHSFFINCIAFSHDAEMIASGSGDNTIKLWHVNTGKEIRTLIGHSDS 560 
WD40-rpts      _____________________)   (_________________WD 6________________)   (____________

Query      561 VWSVAFSQDRQFLASASWDNTIKLWHLHSGREISTLTGHSSYVRCVAFSPDGQTLVSGSDDDTIKIWRRGR 631 
WD40-rpts      _____WD 7________________)   (_________________WD 8________________)   

8 WD40-repeats found in QUERY=gi_186685825_ref_YP_001869021.1_ (Len=631):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   305-343     10.58  551.84  2.3e-06       50.0%     52.82
  WD 2:  Seg 14   344-389      7.48  423.80  0.00012       37.5%     21.32
  WD 3:  Seg 16   390-409      2.96  236.83  0.03932       25.0%     30.03
  WD 4:  Seg 18   413-451     11.58  592.92  6.3e-07       65.0%     55.66
  WD 5:  Seg 22   455-502      8.98  485.54  1.8e-05       45.0%     56.02
  WD 6:  Seg 26   506-544     10.51  548.63  2.5e-06       40.0%     54.88
  WD 7:  Seg 30   548-586     10.57  551.08  2.3e-06       50.0%     56.55
  WD 8:  Seg 34   590-628     11.10  573.29  1.2e-06       57.5%     52.63

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  305-343    -W------QCLQTLRGHSSMVHAIAISP---------DGQFIASGSNDHTIKLWQ
   WD 2  344-389    LGTGKLVRQMGRWSSGHSSMVNSVAFSP---------ISAKLSYQGESGKSTGSA
   WD 3  390-409    --------------------------DL---------NWGMLASGSWDNTIKLWD
   WD 4  413-451    -G------KEIRTLTGHTNWVNSVAFSP---------DGKFLVSGSADCTIKLWQ
   WD 5  455-502    -G------IEIQTLTGHSDSVSSIAYSPRTATTTNSQDRQLVASGSNDYTIKLWQ
   WD 6  506-544    -G------RNIYTLTGHSFFINCIAFSH---------DAEMIASGSGDNTIKLWH
   WD 7  548-586    -G------KEIRTLIGHSDSVWSVAFSQ---------DRQFLASASWDNTIKLWH
   WD 8  590-628    -G------REISTLTGHSSYVRCVAFSP---------DGQTLVSGSDDDTIKIWR

   WD40 Template    TG------ECLRTLSGHTSGVTSVSFSP---------DGKRLVSGSEDGTIKVWD