Input parameters:

  Query = gi_186686180_ref_YP_001869376.1_ (Len=1174)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186686180_ref_YP_001869376.1_, Len=1174):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAEEALKIVNALLHSTFGQRLNDVKSVVFLETWKGQTYEVIAEKLGYQNDYIKQVGSQLWRSLSQATGEDVTKKNIQAV 80  
WD40-rpts                                                                                      

Query       81 LHRYQQSQSTTQDWGEAIDVSRFYGRQAELQTLATWIGNEHCRFVGIFGLGGIGKTTLSVKLAGQIQSQFEYVIWRSLRQ 160 
WD40-rpts                                                                                      

Query      161 ALPLNTLLAEILPILMGSEATINSSISILMQQLRQKRCLLVFDNVESILQSGNRGGQYQQGFEGYQQLFERICDELHQSC 240 
WD40-rpts                                                                                      

Query      241 LIVTGREKPGGIAVRSGKKLPVRSLSLSGLSAIDGQQILMDKGLDTTPQHQTLVNYFGGNPLALKIAATAIQDIFCGDTQ 320 
WD40-rpts                                                                                      

Query      321 AFLAQGNTLFSDLWDLLRQQFERLSPLQQQIMYWLAINREGVTPTKLQTEILPQVPWRELLEALESLKGRSLVETAATGL 400 
WD40-rpts                                                                                      

Query      401 TQQPVIMEYVTEQFIQTIEREMIRGELNLFKNHALIEAQTQDYVREAQIQFILHPLVERLFTHFDTQAQLEEQLCKILAQ 480 
WD40-rpts                                                                                      

Query      481 LRHQTVVQTGYAGGNLLNLFSYLQTDLSSFDFSHLAIRQAYLANTTLHNTNFTNVKIRETVFAETFGGVLSVAFSSDGQY 560 
WD40-rpts                                                              (________________WD 1___

Query      561 LATSDTKGDIQIWDVSTVKQLVRCRGHQHWAWSVAFSPDGRYLASASDDYLVKLWDVETGQCLHTYQGHTYSVNAVAFSP 640 
WD40-rpts      _____________)   (_________________WD 2________________)   (_________________WD 

Query      641 KGNIVASCGQDLSIRLWEVAPEKLNPEVQTLVGHEGRVWAIAFHPNGKILASCSEDYTIRLWDVATGNCFCVWQGHDRWL 720 
WD40-rpts      3________________)      (_________________WD 4________________)   (_____________

Query      721 RSITFSPDGKLLASGSYDNTIKLWDVKSQKCLQTLRGHRQTVTAIAFSPNGQQLASSSFDRTVKLWDVSGNCLKTFLGHS 800 
WD40-rpts      ____WD 5________________)   (_________________WD 6________________)  (__________

Query      801 SRLWSVAYHPNEQQLVSGGDDHATKLWNLQIGRCTKTLKGHTNSVLSLAPSPDSNYLASGHEDQTIKLWDIKNGTLVQTL 880 
WD40-rpts      _______WD 7________________)   (_________________WD 8________________)   (______

Query      881 REHTNRVWSVAFQPASQHPLLASGSADYSIKLWDWKLGTCLQTLHGHTSWVWTVVFSPDGRQLASSSYDQTVKLWDINTG 960 
WD40-rpts      ____________WD 9_________________)   (_________________WD10________________)   (

Query      961 ECLKTFKGHNSPVVSVAFSPDGQLLASSEFDGMIKLWNIDTGECRQTLTGHTNSVWSVTFSPNGQWLLSTSFDRTLKLWL 1040
WD40-rpts      _________________WD11________________)   (_________________WD12________________)

Query     1041 VSTGKCLQTFVGHQDPVMVAQFSPDAQFIVSGSVDRNLKLWHISTGECYQTLVGHSELVYSLVVASISLGDATSARLTAF 1120
WD40-rpts         (_________________WD13________________)   (_____________________WD14_________

Query     1121 SGSLDETIKVWDLQTGKYEQTWRAPRPYEGMKLEEIQGLTEAQLATLQALGAAS 1174
WD40-rpts      ___________)                                          

14 WD40-repeats found in QUERY=gi_186686180_ref_YP_001869376.1_ (Len=1174):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   537-574      7.45  422.26  0.00013       35.0%     49.61
  WD 2:  Seg 13   578-616      9.47  505.76  9.5e-06       42.5%     57.25
  WD 3:  Seg 17   620-658     10.22  536.85  3.6e-06       42.5%     58.16
  WD 4:  Seg 21   665-703      9.59  510.75  8.1e-06       45.0%     48.01
  WD 5:  Seg 24   707-745     10.63  553.84  2.1e-06       52.5%     57.55
  WD 6:  Seg 28   749-787     10.53  549.43  2.4e-06       50.0%     55.21
  WD 7:  Seg 32   790-828     10.20  536.01  3.7e-06       42.5%     55.17
  WD 8:  Seg 36   832-870     10.23  537.36  3.6e-06       55.0%     57.39
  WD 9:  Seg 40   874-914      8.61  470.44  2.8e-05       47.5%     53.84
  WD10:  Seg 44   918-956     10.76  559.06  1.8e-06       60.0%     56.68
  WD11:  Seg 48   960-998     10.83  562.00  1.7e-06       57.5%     55.91
  WD12:  Seg 52  1002-1040    10.45  546.41  2.7e-06       55.0%     56.83
  WD13:  Seg 56  1044-1082    10.06  530.20  4.4e-06       45.0%     57.60
  WD14:  Seg 60  1086-1132     7.89  440.58  7.2e-05       47.5%     53.37

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  537-574    IRETV--FAETFGGVLSVAFSSDGQ--------Y--LATSDTKGDIQIWD
   WD 2  578-616    -VKQLVRCRGHQHWAWSVAFSPDGR--------Y--LASASDDYLVKLWD
   WD 3  620-658    -GQCLHTYQGHTYSVNAVAFSPKGN--------I--VASCGQDLSIRLWE
   WD 4  665-703    -NPEVQTLVGHEGRVWAIAFHPNGK--------I--LASCSEDYTIRLWD
   WD 5  707-745    -GNCFCVWQGHDRWLRSITFSPDGK--------L--LASGSYDNTIKLWD
   WD 6  749-787    -QKCLQTLRGHRQTVTAIAFSPNGQ--------Q--LASSSFDRTVKLWD
   WD 7  790-828    -GNCLKTFLGHSSRLWSVAYHPNEQ--------Q--LVSGGDDHATKLWN
   WD 8  832-870    -GRCTKTLKGHTNSVLSLAPSPDSN--------Y--LASGHEDQTIKLWD
   WD 9  874-914    -GTLVQTLREHTNRVWSVAFQPASQ--------HPLLASGSADYSIKLWD
   WD10  918-956    -GTCLQTLHGHTSWVWTVVFSPDGR--------Q--LASSSYDQTVKLWD
   WD11  960-998    -GECLKTFKGHNSPVVSVAFSPDGQ--------L--LASSEFDGMIKLWN
   WD12 1002-1040   -GECRQTLTGHTNSVWSVTFSPNGQ--------W--LLSTSFDRTLKLWL
   WD13 1044-1082   -GKCLQTFVGHQDPVMVAQFSPDAQ--------F--IVSGSVDRNLKLWH
   WD14 1086-1132   -GECYQTLVGHSELVYSLVVASISLGDATSARLT--AFSGSLDETIKVWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK--------R--LVSGSEDGTIKVWD