Input parameters:

  Query = gi_186686488_ref_YP_001869684.1_ (Len=612)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186686488_ref_YP_001869684.1_, Len=612):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLCINPNCQNTDNPDNLLRCQSCGSELLLEGCYRVTRPIGQGGFAKTFEVSDRGKLKILKVLILNQTKAVSLFQQEAEV 80  
WD40-rpts                                                                                      

Query       81 LKRLNHRGIPNAEEYFKFFPQNSQEPVHCLVMDKIDGENLHEWLEKRDNRPISQKQAVLWLTQLANILHEVHQQQFFHRD 160 
WD40-rpts                                                                                      

Query      161 IKPSNIMLTADGQLVLIDFGIAREITGTYEKKQVAGQITKFVSDGYAPLEQINGHAVPQSDFFALGRTFVHLLTGKYPLE 240 
WD40-rpts                                                                                      

Query      241 LMDDPYGDPYTAGLNWRVETNHISPLLADFIDHLMMRPVKDRPANIQVILESLAEISEALYPTKLTKSKPCKPPSTVKAQ 320 
WD40-rpts                                                                                      

Query      321 IISLERTLGSWNSGHSKAVLALAISPDGQTLVSGSEDNIIKVWNLNNSNEILTLTGHSKQINSVAISPDSQTLASGSDDD 400 
WD40-rpts        (__________________WD 1__________________)   (_________________WD 2___________

Query      401 TIKIWNLKTGEEISTIKANSGTVLSIAISPDQQMIVSGSSDSRVRLWNLKTGECIKTLATHAYRVSSVAISQDGSTVASS 480 
WD40-rpts      _____)   (_________________WD 3________________)   (_________________WD 4_______

Query      481 SWDTTIKIWPKSTLTGHLKPVTSIAIGLNSQILVSASVDRRIIVWNLNTGEKIYTLDGHSDVVNSVAISPDSQKIVSGSD 560 
WD40-rpts      _________)_______________WD 5________________)   (_________________WD 6_________

Query      561 DEKIKVWNLSNGQEAYTVNGHLDGVNALVFSPDGQILVSGGKDTTIKVWRIH 612 
WD40-rpts      _______)   (_________________WD 7________________)  

7 WD40-repeats found in QUERY=gi_186686488_ref_YP_001869684.1_ (Len=612):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   323-364      9.59  510.83  8.1e-06       50.0%     47.65
  WD 2:  Seg 17   368-406     10.88  563.90  1.6e-06       45.0%     55.60
  WD 3:  Seg 21   410-448     10.43  545.60  2.8e-06       35.0%     55.49
  WD 4:  Seg 25   452-490     10.82  561.46  1.7e-06       47.5%     56.03
  WD 5:  Seg 28   488-526      9.32  499.70  1.1e-05       37.5%     43.63
  WD 6:  Seg 32   530-568     11.02  569.80  1.3e-06       52.5%     56.17
  WD 7:  Seg 36   572-610     10.82  561.70  1.7e-06       52.5%     53.89

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  323-364    SLERTLGSWNSGHSKAVLALAISPDGQTLVSGSEDNIIKVWN
   WD 2  368-406    -SN--EILTLTGHSKQINSVAISPDSQTLASGSDDDTIKIWN
   WD 3  410-448    -GE--EISTIKANSGTVLSIAISPDQQMIVSGSSDSRVRLWN
   WD 4  452-490    -GE--CIKTLATHAYRVSSVAISQDGSTVASSSWDTTIKIWP
   WD 5  488-526    -IW--PKSTLTGHLKPVTSIAIGLNSQILVSASVDRRIIVWN
   WD 6  530-568    -GE--KIYTLDGHSDVVNSVAISPDSQKIVSGSDDEKIKVWN
   WD 7  572-610    -GQ--EAYTVNGHLDGVNALVFSPDGQILVSGGKDTTIKVWR

   WD40 Template    TGE--CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD