Input parameters:

  Query = gi_186686617_ref_YP_001869813.1_ (Len=1229)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186686617_ref_YP_001869813.1_, Len=1229):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNPSIYTVGGTVQAGSGIYIPRQADEELLGLCRSAIFAYVLTPRQMGKSSLMVRTADTLREEGISSVIVDLQELGASVT 80  
WD40-rpts                                                                                      

Query       81 AEQWYFGFLVKLDDQLMFDTDVVSWWQEHEHLGVSQRLTQFFEKVLLAEVEGQVVIFVDEIDSTLSLDFTDDFFIAIRYL 160 
WD40-rpts                                                                                      

Query      161 YVARATNPEFGRLSFVLMGVATPGDLISDAKRTPFNIGQRVDLTDFTFEEALPFAEGLGLPSDESKQVLRQVLKWTGGHP 240 
WD40-rpts                                                                                      

Query      241 YLTQRLCDALVLIPPTPLKKGGNELPDLEIPTAPVSNSSIVPPFLRGVRGDRVLSSADIDSIVSSTFFGAMSEQDNNLQF 320 
WD40-rpts                                                                                      

Query      321 VRDMLTKRSPDPEVLTIYREIRWGKRAVVDEEQSLAKSHLKLSGVVRRENNVLRVRNEVYRQVFDYKWINKHLPFNLRDR 400 
WD40-rpts                                                                                      

Query      401 WEQLKPALPYVIVMIVFSTLSTGVAWYIYKQNLIAQKARDSEKEQRLIAQDALKREQTQRQEADRQTKNAQNQQQKAEEQ 480 
WD40-rpts                                                                                      

Query      481 HREADKQRQRAETGEAQAKSAQELAEKRGIDLEKALKQTKAAEQLAKDRQADAEKQRNIAQKQEQQAIAAKADADKRRIN 560 
WD40-rpts                                                                                      

Query      561 AEILANSLKSQNLMASNFELDALIEGLKVGKRLKTPNKKVEPNTRVLAVATLQQVIYGVKERNRLEAHSSSVRGVAFSPD 640 
WD40-rpts                                                                (_________________WD 1

Query      641 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 720 
WD40-rpts      ________________)  (_________________WD 2________________)  (_________________WD

Query      721 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 800 
WD40-rpts       3________________)  (_________________WD 4________________)  (_________________

Query      801 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNG 880 
WD40-rpts      WD 5________________)  (_________________WD 6________________)  (_______________

Query      881 VAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 960 
WD40-rpts      __WD 7________________)  (_________________WD 8________________)  (_____________

Query      961 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 1040
WD40-rpts      ____WD 9________________)  (_________________WD10________________)  (___________

Query     1041 SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 1120
WD40-rpts      ______WD11________________)  (_________________WD12________________)  (_________

Query     1121 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWNLNLDDLMVKG 1200
WD40-rpts      ________WD13________________)  (_________________WD14________________)          

Query     1201 CTWVRDYLQNNPNVSKDDKHLCDDIGTRR 1229
WD40-rpts                                   

14 WD40-repeats found in QUERY=gi_186686617_ref_YP_001869813.1_ (Len=1229):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   619-657      9.07  489.44  1.6e-05       40.0%     47.41
  WD 2:  Seg 13   660-698     10.52  549.22  2.5e-06       50.0%     55.85
  WD 3:  Seg 17   701-739     10.75  558.59  1.8e-06       50.0%     56.43
  WD 4:  Seg 21   742-780     10.62  553.28  2.2e-06       50.0%     54.82
  WD 5:  Seg 25   783-821     10.45  546.31  2.7e-06       50.0%     56.94
  WD 6:  Seg 29   824-862     10.69  556.32  2.0e-06       50.0%     54.53
  WD 7:  Seg 33   865-903     10.49  547.94  2.6e-06       47.5%     55.66
  WD 8:  Seg 37   906-944     10.31  540.39  3.2e-06       50.0%     54.29
  WD 9:  Seg 41   947-985     10.36  542.66  3.0e-06       50.0%     56.46
  WD10:  Seg 45   988-1026    10.53  549.68  2.4e-06       50.0%     56.02
  WD11:  Seg 49  1029-1067    10.38  543.49  2.9e-06       47.5%     55.92
  WD12:  Seg 53  1070-1108    10.73  557.77  1.9e-06       50.0%     54.73
  WD13:  Seg 57  1111-1149    10.67  555.58  2.0e-06       50.0%     55.43
  WD14:  Seg 61  1152-1190    10.41  544.73  2.8e-06       50.0%     55.26

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  619-657    VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN
   WD 2  660-698    GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN
   WD 3  701-739    GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN
   WD 4  742-780    GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN
   WD 5  783-821    GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN
   WD 6  824-862    GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN
   WD 7  865-903    GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN
   WD 8  906-944    GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN
   WD 9  947-985    GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN
   WD10  988-1026   GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN
   WD11 1029-1067   GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN
   WD12 1070-1108   GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN
   WD13 1111-1149   GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN
   WD14 1152-1190   GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD