WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: gi_186686820_ref_YP_001870013.1_ [Nostoc punctiforme PCC 73102] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = gi_186686820_ref_YP_001870013.1_ (Len=2172) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (gi_186686820_ref_YP_001870013.1_, Len=2172): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRDRRRWGIAHRTSRIILIALSAFLVTIAPTFPQNFSGVFFAPQVLAQTSNQQQTEAVTGSFIDYFAEERQFKGHEGSVN 80
WD40-rpts (________________WD 1_______________) (______________
Query 81 SASFSPDGKLIVTAGADNTARVWDFAGKQVAELIGHQGNVKSANFSPDGKLIVTASFDDTARIWDISGKQLVELKGHQGN 160
WD40-rpts ___WD 2________________) (_________________WD 3________________) (____________
Query 161 VYSANFSPDGKAITTAGADKTVRLWDLSGKQLREFKAHNASVYSAKFSPDGKHIVTASADKTARVWDTSGKLLAELKGHT 240
WD40-rpts _____WD 4________________) (_________________WD 5________________) (__________
Query 241 NTVWSANFSCDDKRIVTASDDKTARIWDLSGKQLAVLQGHQDSVYSANFSPDSKQIVTASIDFATLLWESSGTLLGKLQQ 320
WD40-rpts _______WD 6________________) (_________________WD 7________________) (________
Query 321 HTGGVNSANFSPDGKWIVTASSDSTARVWDLSGKMLTELTSFQREVGSARFSSDGQHIVTKSGNIAQVWDLSNRQLVEFK 400
WD40-rpts _________WD 8________________) (________________WD 9________________) (_______
Query 401 GHQADIRSVRFSQNGELLVTASDDKTARIWDLSGKQLAELKGHEDFIYDARFSPNGKSIITASNDKTSRIWDLSGKQLAE 480
WD40-rpts __________WD10________________) (_________________WD11________________)(_______
Query 481 LKHQDYVSSATFSPDGQKILIESGSFTLSIWDIYGKFLATIKGDKFDINSGTFSPDGQRILTTSLDDTARVFDIYGKLLT 560
WD40-rpts __________WD12_________________) (_________________WD13________________) (____
Query 561 EFRGHQEQVINANYSPNGQRIVTASLDGTIRVWDTSGKQLTLLKGHKGSVNSASFSPDGKVIVSAYDDKTILVWDTSGKI 640
WD40-rpts _____________WD14________________) (_________________WD15________________)
Query 641 LAQIGTPKNESEAGFQGKKFSPNDSEIIKLDSFSPDGKRIVIDNRVWSLSNKLLVQIPKLKFPEIPTDESSLRLIFSVTK 720
WD40-rpts (______________________WD16_____________________) (____________
Query 721 VNSTNFSHDGQMIITSSKGIVYLWNSSGKLLAELKKHWGPIRSASFSSNGQQIVTASYDGTARIWDTSGKELALLNHNSF 800
WD40-rpts ____WD17________________) (_________________WD18________________)(_____________
Query 801 VNSASFSPNGKQIVTASDDNTARVWNSSGKLLTELKGHTQPVLSTSFSLDAKHIVTASADKTARVWDLSGKQLAELQHSA 880
WD40-rpts ____WD19_________________) (_________________WD20________________)(____________
Query 881 IVSSANFSSDGKQIITTSHDGSAGVWDLNNKTAVRLSHQHIVNEARFSPDEKLVITASRDGTARVWDLSGKQIVLFKHQS 960
WD40-rpts _____WD21_________________)(_________________WD22_________________)(____________
Query 961 SVNSANFSPDGKQIITASDDKTARVWNLSGKLLLELKKSETTLNSASFSPDGKRIVTTSDDGTARLWNTSGKLLMVLKGR 1040
WD40-rpts _____WD23_________________) (_________________WD24________________) (_________
Query 1041 PDWLLDASFSPDGKQIVTASDDGTARLWNTSGKILAELKGQEKTVKSASFSPDGQKIVTVSFDAASSSGAVRLWDLSGKL 1120
WD40-rpts ________WD25________________) (___________________WD26___________________) (__
Query 1121 LVELQGHQGQVLCANFSANGQRIVTASDDKTARVWDLSGKQIAILSHQGGVNRAIFSPDGQRIVTASDDGTAHLWDLSGK 1200
WD40-rpts _______________WD27________________)(_________________WD28_________________) (_
Query 1201 LLTQFKEHQDAIQSVSFSPNGQLVVTASWDGTARVWNLSGKQIVLFNHQREVIDTSFSPNGQYIVTASIDNTARLWDLSG 1280
WD40-rpts ________________WD29________________)(_________________WD30_________________) (
Query 1281 TLLVEFVGYQGGIGSANFSPDGQWIINLEYDKPSLWNLSLRFPLRFPKASIYAYEDTFPNTSVEKSTALLKEYWVNIGSA 1360
WD40-rpts ________________WD31________________) (________________
Query 1361 KFSPDGQRIISVFSDGSTRVWDLSGRLLAFIKGHQGRVTSSNFSPDGQRILTTSNDGTARIWDLSGKQLASLELPALPSS 1440
WD40-rpts _WD32________________) (_________________WD33________________) (_____
Query 1441 PKVEADRLQNLEFYAPNCAAAFEPWQKALKIYSEIADHENQAYMLRELGNAYYCLGNFTKAIASYSQSLENASKYNYLQI 1520
WD40-rpts ____________WD34________________)
Query 1521 ELNSLSNLGRVYNSLGDYDIAIKYYNEALKILDMHDAPQNKTDVLRGRGYAYYQNNKLEEASKDYLQALDIDEKNKNVAG 1600
WD40-rpts
Query 1601 IAINKVNLANIYFYLGDFFQAIQYYREALEFSPSEALAGLGNIYLAFGDTAKAVDLHQQSLAKAQQDENYEIQGNALNNL 1680
WD40-rpts
Query 1681 AYTFQLSGNLPAAEKTLFNAIRVWESLRSRLDDANKISIFEKQTRTYRLLQEVLIAQNKLTEALEISERGRARAFIDLLN 1760
WD40-rpts
Query 1761 KRLSPNQTEQSKLPTVNIEQIKQIAKNENATLVQYSIITDEFKVDGKLQTQDSELYIWVIKPTGEVSFNRSDLKNLWQKE 1840
WD40-rpts
Query 1841 KTTLKQLVDKTRFSMGVKDIKSRSPGGIKVSAAEGAKQGDRLQRLHDFLIKPIADILPSNPNDRVIFIPQGELFLVPFPA 1920
WD40-rpts
Query 1921 LQYDQNKYLIEKHTILTAPSIQVLDFTSKQQRRVEKLNAKSLIVGNPTMPKVELEPGKPPEQLKDLPWAEKEAKDIAEIL 2000
WD40-rpts
Query 2001 KTQALTGNQATKTAILQKMPEAGIIHFATHGLIDDNRGLGSAIALAPDPPSSPLTKGGKEGGNGLLTAEEILNLKLNADL 2080
WD40-rpts
Query 2081 VVLSACDTGRGRITGDGVIGLSRSLISAGVPSVIVSLWAVDDNSTSFLMTEFYNNLQQKLDKATALRKAMLTTMQKYPQP 2160
WD40-rpts
Query 2161 KNWAAFTLIGES 2172
WD40-rpts
 34 WD40-repeats found in QUERY=gi_186686820_ref_YP_001870013.1_ (Len=2172): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 23-59 4.56 303.12 0.00511 12.5% 44.39 WD 2: Seg 7 66-104 9.36 501.44 1.1e-05 45.0% 49.26 WD 3: Seg 11 107-145 10.14 533.39 4.0e-06 45.0% 57.32 WD 4: Seg 15 148-186 10.12 532.89 4.1e-06 42.5% 57.48 WD 5: Seg 19 189-227 10.26 538.67 3.4e-06 47.5% 55.47 WD 6: Seg 23 230-268 10.46 546.78 2.7e-06 47.5% 57.15 WD 7: Seg 27 271-309 9.72 516.14 6.9e-06 40.0% 54.95 WD 8: Seg 31 312-350 10.43 545.69 2.7e-06 52.5% 56.70 WD 9: Seg 35 353-390 7.38 419.71 0.00014 35.0% 52.65 WD10: Seg 39 393-431 9.41 503.29 1.0e-05 37.5% 55.65 WD11: Seg 43 434-472 9.90 523.67 5.4e-06 37.5% 55.97 WD12: Seg 47 473-512 9.25 496.96 1.2e-05 30.0% 55.58 WD13: Seg 51 515-553 9.75 517.48 6.6e-06 40.0% 56.86 WD14: Seg 55 556-594 10.26 538.61 3.4e-06 45.0% 57.48 WD15: Seg 59 597-635 10.54 550.13 2.4e-06 55.0% 58.18 WD16: Seg 64 645-693 5.45 339.94 0.00163 22.5% 35.20 WD17: Seg 66 708-745 6.36 377.40 0.00051 27.5% 50.64 WD18: Seg 70 748-786 9.85 521.73 5.8e-06 40.0% 57.79 WD19: Seg 74 787-826 10.55 550.45 2.4e-06 45.0% 56.24 WD20: Seg 78 829-867 10.23 537.24 3.6e-06 50.0% 58.06 WD21: Seg 82 868-907 9.44 504.58 9.8e-06 35.0% 53.91 WD22: Seg 86 908-947 9.75 517.57 6.6e-06 35.0% 52.85 WD23: Seg 90 948-987 10.43 545.41 2.8e-06 40.0% 53.59 WD24: Seg 94 990-1028 10.05 529.87 4.5e-06 45.0% 54.97 WD25: Seg 98 1031-1069 10.30 539.95 3.3e-06 42.5% 56.41 WD26: Seg102 1072-1115 8.85 480.39 2.1e-05 45.0% 56.24 WD27: Seg106 1118-1156 9.96 526.19 5.0e-06 42.5% 58.20 WD28: Seg110 1157-1196 10.43 545.38 2.8e-06 40.0% 56.37 WD29: Seg114 1199-1237 10.08 531.24 4.3e-06 42.5% 54.69 WD30: Seg118 1238-1277 10.05 529.60 4.5e-06 35.0% 54.80 WD31: Seg122 1280-1317 7.69 432.31 9.3e-05 30.0% 54.06 WD32: Seg126 1344-1382 8.03 446.53 6.0e-05 35.0% 53.81 WD33: Seg130 1385-1423 10.24 537.65 3.5e-06 47.5% 54.90 WD34: Seg135 1435-1473 3.29 250.76 0.02569 5.0% 19.03Multiple sequence alignment of 34 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 23-59 -A---------FLVTIAPTFPQNFSGVFFAPQV--LAQTSNQ-----QQTEAVT WD 2 66-104 -F---------AEERQFKGHEGSVNSASFSPDGKLIVTAGAD-----NTARVWD WD 3 107-145 -G---------KQVAELIGHQGNVKSANFSPDGKLIVTASFD-----DTARIWD WD 4 148-186 -G---------KQLVELKGHQGNVYSANFSPDGKAITTAGAD-----KTVRLWD WD 5 189-227 -G---------KQLREFKAHNASVYSAKFSPDGKHIVTASAD-----KTARVWD WD 6 230-268 -G---------KLLAELKGHTNTVWSANFSCDDKRIVTASDD-----KTARIWD WD 7 271-309 -G---------KQLAVLQGHQDSVYSANFSPDSKQIVTASID-----FATLLWE WD 8 312-350 -G---------TLLGKLQQHTGGVNSANFSPDGKWIVTASSD-----STARVWD WD 9 353-390 -G---------KMLTELTSFQREVGSARFSSDGQHIVTKSGN------IAQVWD WD10 393-431 -N---------RQLVEFKGHQADIRSVRFSQNGELLVTASDD-----KTARIWD WD11 434-472 -G---------KQLAELKGHEDFIYDARFSPNGKSIITASND-----KTSRIWD WD12 473-512 LS---------GKQLAELKHQDYVSSATFSPDGQKILIESGS-----FTLSIWD WD13 515-553 -G---------KFLATIKGDKFDINSGTFSPDGQRILTTSLD-----DTARVFD WD14 556-594 -G---------KLLTEFRGHQEQVINANYSPNGQRIVTASLD-----GTIRVWD WD15 597-635 -G---------KQLTLLKGHKGSVNSASFSPDGKVIVSAYDD-----KTILVWD WD16 645-693 GTPKNESEAGFQGKKFSPNDSEIIKLDSFSPDGKRIVIDNRV-----WSLSNKL WD17 708-745 -D---------ESSLRLIFSVTKVNSTNFSHDGQMIITSS-K-----GIVYLWN WD18 748-786 -G---------KLLAELKKHWGPIRSASFSSNGQQIVTASYD-----GTARIWD WD19 787-826 TS---------GKELALLNHNSFVNSASFSPNGKQIVTASDD-----NTARVWN WD20 829-867 -G---------KLLTELKGHTQPVLSTSFSLDAKHIVTASAD-----KTARVWD WD21 868-907 LS---------GKQLAELQHSAIVSSANFSSDGKQIITTSHD-----GSAGVWD WD22 908-947 LN---------NKTAVRLSHQHIVNEARFSPDEKLVITASRD-----GTARVWD WD23 948-987 LS---------GKQIVLFKHQSSVNSANFSPDGKQIITASDD-----KTARVWN WD24 990-1028 -G---------KLLLELKKSETTLNSASFSPDGKRIVTTSDD-----GTARLWN WD25 1031-1069 -G---------KLLMVLKGRPDWLLDASFSPDGKQIVTASDD-----GTARLWN WD26 1072-1115 -G---------KILAELKGQEKTVKSASFSPDGQKIVTVSFDAASSSGAVRLWD WD27 1118-1156 -G---------KLLVELQGHQGQVLCANFSANGQRIVTASDD-----KTARVWD WD28 1157-1196 LS---------GKQIAILSHQGGVNRAIFSPDGQRIVTASDD-----GTAHLWD WD29 1199-1237 -G---------KLLTQFKEHQDAIQSVSFSPNGQLVVTASWD-----GTARVWN WD30 1238-1277 LS---------GKQIVLFNHQREVIDTSFSPNGQYIVTASID-----NTARLWD WD31 1280-1317 -G---------TLLVEFVGYQGGIGSANFSPDGQWIINLEYD-----KP-SLWN WD32 1344-1382 -E---------KSTALLKEYWVNIGSAKFSPDGQRIISVFSD-----GSTRVWD WD33 1385-1423 -G---------RLLAFIKGHQGRVTSSNFSPDGQRILTTSND-----GTARIWD WD34 1435-1473 -P---------ALPSSPKVEADRLQNLEFYAPNCAAAFEPWQ-----KALKIYS WD40 Template TG---------ECLRTLSGHTSGVTSVSFSPDGKRLVSGSED-----GTIKVWD |
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