Input parameters:

  Query = gi_186686879_ref_YP_001870072.1_ (Len=1006)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186686879_ref_YP_001870072.1_, Len=1006):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGDRASRIILIALSAFLVTIAPTFPQNFSGIFFAPQVLAQTPNQPNPHKNPALAVTGSFIDYFAEERQLKGHEGSVNSAS 80  
WD40-rpts                    (_________________WD 1________________)                 (_________

Query       81 FSPDDKLIVTAGADNTARVWDFSGKQLVELIGHQSNVYSANFSPDGKLIVTASFDGTARIWDISGKQLVELKGHQGNVYS 160 
WD40-rpts      ____WD 2____________)  (_________________WD 3________________)  (_______________

Query      161 ANFSSDGKWIITASADKTARIWDISGQQIAQITGHENIVTSANFSSDGKRIITASADKTACMWDLSGKLLVQLKGHTDTV 240 
WD40-rpts      __WD 4________________)  (_________________WD 5________________)  (_____________

Query      241 WSANFSPDGQRIVTASDDKTARVWDLSGKVLAELKGHGDSVYSASFSPDGKLIVTASIDRTARVWDATGKVIGKLEGHQG 320 
WD40-rpts      ____WD 6________________)  (_________________WD 7________________)  (___________

Query      321 SVNNAKFSFDGTQIVTASSDGSILIWNTSKKIFIELLGHLGEVFSASFSPDGKQIITTSKDGTVRIWNTLNKQITEIKAQ 400 
WD40-rpts      ______WD 8________________)  (_________________WD 9________________)(___________

Query      401 VAVQSANFSPNGKLIVTTSSEKFAQVWDTSGKILTELKGHESRVNSATFSPDGKFIVTASDDTTARIWDISGKLLTELKA 480 
WD40-rpts      ______WD10_________________)  (_________________WD11________________)  (________

Query      481 DHGRVVSANFSYDGKQIITGSGNTAFIWNTSGKLISKLELKGPQYSVISANFSRDRQLIVTASHDGSAWIWDSSGKVITK 560 
WD40-rpts      ________WD12________________)(___________________WD13__________________)        

Query      561 IEFPNNITENYSENRVYGADFTPDGKYLVTVTSDGGRVWDISGKLIAEFKGHQDEVINFSLSPDGKQMLTASDDRTVRVW 640 
WD40-rpts        (________________WD14________________)  (_________________WD15________________

Query      641 DISNKSLAQINSSQIPSTNNQTKLQYKDEDKSITSLAFSPDNQFFVTGSKSGNVKIWDTSGKLLNELRGHEYQINGINFS 720 
WD40-rpts      )                  (_________________WD16________________)  (________________WD1

Query      721 SDGKSILTVSLDFARVWSNSGKLLAEIKGKQKHDAALTSASLSPDGKLIVTGYSSFQQNAYLWDSSGKQQMELQGHQNFV 800 
WD40-rpts      7________________)(____________________WD18____________________)  (_____________

Query      801 NSVNFSPDGKLIVTASDDETACIWDTTGKLLNELKGNSSKVKSASFSPDGKKIITTSSDGTAIIWDTFGKLLAKFNIGFP 880 
WD40-rpts      ____WD19________________)  (_________________WD20________________)   (__________

Query      881 ISSYSSTRVNFSPDGRFIIAQIEGGFTRLWGADGTVISTDESLGNITFSPDGKLIAIVRRGGSASVGIPEEKKLAILQIE 960 
WD40-rpts      ________WD21__________________)(________________WD22_______________)  (_________

Query      961 PYLVQRVIFSHNSKFFVTISEIPFSSVDKIQVWDVGKLDWMTETSK 1006
WD40-rpts      __________WD23___________________)            

23 WD40-repeats found in QUERY=gi_186686879_ref_YP_001870072.1_ (Len=1006):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53       3.90  275.79  0.01189        5.0%      0.58
  WD 2:  Seg  5    71-101      7.73  434.07  8.8e-05       40.0%     45.59
  WD 3:  Seg  8   104-142     10.28  539.30  3.3e-06       52.5%     57.36
  WD 4:  Seg 12   145-183      9.85  521.40  5.8e-06       42.5%     57.34
  WD 5:  Seg 16   186-224      9.92  524.52  5.3e-06       42.5%     56.04
  WD 6:  Seg 20   227-265     10.47  547.06  2.6e-06       52.5%     55.02
  WD 7:  Seg 24   268-306     10.13  533.11  4.1e-06       52.5%     57.71
  WD 8:  Seg 28   309-347      9.75  517.58  6.6e-06       37.5%     56.99
  WD 9:  Seg 32   350-388      9.65  513.14  7.5e-06       42.5%     55.36
  WD10:  Seg 36   389-428      9.08  489.84  1.6e-05       35.0%     54.81
  WD11:  Seg 40   431-469     10.49  548.12  2.5e-06       50.0%     57.28
  WD12:  Seg 44   472-509      7.66  430.89  9.7e-05       35.0%     55.26
  WD13:  Seg 48   510-552      8.57  468.84  3.0e-05       35.0%     57.72
  WD14:  Seg 53   563-600      7.12  408.86  0.00019       35.0%     45.39
  WD15:  Seg 56   603-641     10.07  530.74  4.4e-06       40.0%     57.19
  WD16:  Seg 61   660-698      8.82  479.17  2.2e-05       32.5%     49.05
  WD17:  Seg 64   701-738      8.02  446.05  6.1e-05       35.0%     54.76
  WD18:  Seg 68   739-784      7.11  408.43  0.00019       35.0%     50.15
  WD19:  Seg 72   787-825     10.01  528.00  4.8e-06       47.5%     56.64
  WD20:  Seg 76   828-866     10.59  552.24  2.2e-06       50.0%     54.85
  WD21:  Seg 80   870-911      7.23  413.17  0.00017       27.5%     55.85
  WD22:  Seg 84   912-948      7.60  428.72  0.00010       22.5%     47.11
  WD23:  Seg 88   951-994      7.04  405.46  0.00021       35.0%     55.00

Multiple sequence alignment of 23 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-53     -A----F---LVTIAPTF---PQNFSGIFFAPQVLAQTPN--QP-----NPHKNPAL
   WD 2   71-101    ----------------GH---EGSVNSASFSPDDKLIVTA--GA-----DNTARVWD
   WD 3  104-142    -G----K---QLVELIGH---QSNVYSANFSPDGKLIVTA--SF-----DGTARIWD
   WD 4  145-183    -G----K---QLVELKGH---QGNVYSANFSSDGKWIITA--SA-----DKTARIWD
   WD 5  186-224    -G----Q---QIAQITGH---ENIVTSANFSSDGKRIITA--SA-----DKTACMWD
   WD 6  227-265    -G----K---LLVQLKGH---TDTVWSANFSPDGQRIVTA--SD-----DKTARVWD
   WD 7  268-306    -G----K---VLAELKGH---GDSVYSASFSPDGKLIVTA--SI-----DRTARVWD
   WD 8  309-347    -G----K---VIGKLEGH---QGSVNNAKFSFDGTQIVTA--SS-----DGSILIWN
   WD 9  350-388    -K----K---IFIELLGH---LGEVFSASFSPDGKQIITT--SK-----DGTVRIWN
   WD10  389-428    TL----N---KQITEIKA---QVAVQSANFSPNGKLIVTT--SS-----EKFAQVWD
   WD11  431-469    -G----K---ILTELKGH---ESRVNSATFSPDGKFIVTA--SD-----DTTARIWD
   WD12  472-509    -G----K---LLTELKAD---HGRVVSANFSYDGKQIITG--S------GNTAFIWN
   WD13  510-552    TS----GKLISKLELKGP---QYSVISANFSRDRQLIVTA--SH-----DGSAWIWD
   WD14  563-600    -F----P---NNITENYS---ENRVYGADFTPDGKYLVTV--TS-----DGG-RVWD
   WD15  603-641    -G----K---LIAEFKGH---QDEVINFSLSPDGKQMLTA--SD-----DRTVRVWD
   WD16  660-698    -N----Q---TKLQYKDE---DKSITSLAFSPDNQFFVTG--SK-----SGNVKIWD
   WD17  701-738    -G----K---LLNELRGH---EYQINGINFSSDGKSILTV--SL-----D-FARVWS
   WD18  739-784    NSGKLLA---EIKGKQKH---DAALTSASLSPDGKLIVTGYSSF-----QQNAYLWD
   WD19  787-825    -G----K---QQMELQGH---QNFVNSVNFSPDGKLIVTA--SD-----DETACIWD
   WD20  828-866    -G----K---LLNELKGN---SSKVKSASFSPDGKKIITT--SS-----DGTAIIWD
   WD21  870-911    -K----L---LAKFNIGFPISSYSSTRVNFSPDGRFIIAQ--IE-----GGFTRLWG
   WD22  912-948    ----------ADGTVIST---DESLGNITFSPDGKLIAIV--RR-----GGSASVGI
   WD23  951-994    -E----K---KLAILQIE---PYLVQRVIFSHNSKFFVTI--SEIPFSSVDKIQVWD

   WD40 Template    TG----E---CLRTLSGH---TSGVTSVSFSPDGKRLVSG--SE-----DGTIKVWD