Input parameters:

  Query = gi_186686880_ref_YP_001870073.1_ (Len=1170)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186686880_ref_YP_001870073.1_, Len=1170):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTFTKFACGCILLLISACLFIPNRQLIVTASTIFKDIAQASGASKYSPIELNPYASTVENASFSPDGRFIITGFDNGTAR 80  
WD40-rpts      (__________________WD 1_________________)   (_________________WD 2______________

Query       81 IWDKSGNLITELKAGENKVKSAFFSPNSKFIVTSSNRTKIWDTSGKKLVELKGYNPSISPDCKFIVTTFLGATLWDTSGK 160 
WD40-rpts      __)  (________________WD 3_______________)  (_____________WD 4_____________)   (

Query      161 LLVEFKEDKDNPVMSASFSPDSKLIITALRNGIVRVWDTNGKLITEFTADRNLLKSAVFSPNGKLIFTTSFGTSRVWDIL 240 
WD40-rpts      _________________WD 5________________)  (________________WD 6________________)  

Query      241 GKLLAELKGRHLSIQSANFSPDSKLIVTTSLNNSDFFNRNAQVWDTSGKEIAELKGHEGDVTGANFSPDGKRIVTVSNDG 320 
WD40-rpts      (____________________WD 7___________________)  (_________________WD 8___________

Query      321 TARIWDTNGKMLLTLKGHQGNVSKASFSPDGQLVITASDDGTSRLWDANAKQLATLNLGEKIAISPKAEADRLRDLQFYS 400 
WD40-rpts      _____)  (_________________WD 9________________)                                 

Query      401 PNCALAFDPWQKALKLYQQISDKENQAVILEKLGNAHYCIGYYTSAIQSYTQATAIAQKFNYPQLQANNLSNLGNVYNTL 480 
WD40-rpts                                                                                      

Query      481 ADYETAINKYNEALKLLPKDNSPSKAKILQGRGNSYNSQSKYREAIQDYLQALAIDEVIKNTSGVAENKVNLASIYLASG 560 
WD40-rpts                                                                                      

Query      561 DTNKATQYYKEALDIKPMEALSGLGNVYWTLGEINKAIDLYQQSLAKAQQQENKEGEGNALNSLGFTLYKSDRLTEAEQY 640 
WD40-rpts                                                                                      

Query      641 LRPAIAIWENLRIVLDDGNKISIFEKQTRTYRLLQEVLIAQNKITEALEVSESGRARAFIELLSKRLSPNQTEQLKVPVL 720 
WD40-rpts                                                                                      

Query      721 NTEQMKQVAKNENATLVQYSIITDEFKVGGKLQTQDSELYIWVIKPTGEIKFYPIDLKPLWQQQNTSLRNKVDQTRQSIV 800 
WD40-rpts                                                                                      

Query      801 KDVSLTSRSNNITLTPGDRVKLNDDEPDWEAWQVVSVDIKNGKITIRLPSWEAEKPAIERPIIDVVKKIGINSFVANAKN 880 
WD40-rpts                                                                                      

Query      881 LQLQELYQLLIQPIADILPKEETARVIFIPQDALFLVPFPALQDSSGQYLIDKHTILTAPSIQILESTHKLRQKVPGSAK 960 
WD40-rpts                                                                                      

Query      961 DILIVGNPTMPKVSKNPRESPQQLGALPGSEKEALAIASFWKTQALIGNQATKKAVLQKLPLAKIIHLATHGLLDDIRGL 1040
WD40-rpts                                                                                      

Query     1041 GSSIVFAPEGQDNGLLTAEDILKLYTALQGSTLSAELVVLSACDTGQGRLTGDGVIGLSRSIIAAGVPSVIVSLWSIPDA 1120
WD40-rpts                                                                                      

Query     1121 PTAELMTEFYENFRKNPDKATALRQAMLTTKKKHPNPVEWAAFTLIGESE 1170
WD40-rpts                                                        

9 WD40-repeats found in QUERY=gi_186686880_ref_YP_001870073.1_ (Len=1170):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-41       7.06  406.26  0.00021       12.5%     45.86
  WD 2:  Seg  5    45-83      10.18  535.29  3.8e-06       35.0%     46.44
  WD 3:  Seg  9    86-122      7.65  430.76  9.7e-05       32.5%     50.20
  WD 4:  Seg 13   125-156      5.38  336.70  0.00180       32.5%     36.26
  WD 5:  Seg 16   160-198      9.57  509.84  8.4e-06       30.0%     51.76
  WD 6:  Seg 20   201-238      8.55  467.90  3.1e-05       30.0%     49.80
  WD 7:  Seg 24   241-285      8.68  473.16  2.6e-05       37.5%     52.97
  WD 8:  Seg 28   288-326     11.33  582.80  8.7e-07       50.0%     52.48
  WD 9:  Seg 32   329-367     10.97  568.01  1.4e-06       47.5%     52.70

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-41     MTFTKFACGCILLLISACLFIPNRQLIVTASTIF-----KDIAQAS
   WD 2   45-83     -KYSPIELNPYASTVENASFSPDGRFIITGFDNG------TARIWD
   WD 3   86-122    -GNLITELKAGENKVKSAFFSPNSKFIVTSS--N------RTKIWD
   WD 4  125-156    -GKKLVELKGY-----NPSISPDCKFIVTTFLGA------TL--WD
   WD 5  160-198    -KLLVEFKEDKDNPVMSASFSPDSKLIITALRNG------IVRVWD
   WD 6  201-238    -GKLITEFTADRNLLKSAVFSPNGKLIFTTSFG-------TSRVWD
   WD 7  241-285    -GKLLAELKGRHLSIQSANFSPDSKLIVTTSLNNSDFFNRNAQVWD
   WD 8  288-326    -GKEIAELKGHEGDVTGANFSPDGKRIVTVSNDG------TARIWD
   WD 9  329-367    -GKMLLTLKGHQGNVSKASFSPDGQLVITASDDG------TSRLWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDG------TIKVWD