Input parameters:

  Query = gi_186687001_ref_YP_001870390.1_ (Len=1182)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186687001_ref_YP_001870390.1_, Len=1182):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVEEAIALVEQVLERGRLTKVQEIVFRQSWAGQTYLEMAVDCDYNHSHIKDVGSELWRSLSQALGEKVTKNNLHGVLKR 80  
WD40-rpts                                                                                      

Query       81 IAQGQKDTNASSTLNLQPFTNWGEAIDVSQFYGRTTELETLSQWIVRDRCRVVTLLGMGGMGKTALSVKLAEQLQGEFEY 160 
WD40-rpts                                                                                      

Query      161 VIWRSLRHAPFFQDKLTDCIKILSHQQVTTLPSDPHEQITCLIEYLRKSRCLLILDNFDTLLQQGKQTGCYREGYESYGE 240 
WD40-rpts                                                                                      

Query      241 LLWRLGETQHQSCVLLTSREKPAEIAALEGDGLPVRTLALSGLEVADGQTILTLKGLSGAEDETRQLVECYRGNPLALKI 320 
WD40-rpts                                                                                      

Query      321 AATSIRDLYEGNIARFLTDGTTVFKGIGNLLEQQFKRLSTKEQQIMYWLAINREPVVAAVLQEDIVPAVSRANLLEALES 400 
WD40-rpts                                                                                      

Query      401 LSWRSLIEKSFGGFTQQPVVMEYMTDQLIEQVCQEIINFEIRLLNLYALIKANAKDYIRESQTHVILESLLIGLQSRLNN 480 
WD40-rpts                                                                                      

Query      481 PGEIELKIQQLILRLQKEIPAQPGYVCGNLINLLRHLKVDFTNYDFSNLTIWQADFQGTNLNKVNFTGANIKKSVFTEYL 560 
WD40-rpts                                                                            (_________

Query      561 ASSLCVKFSPDGKFLVSTDANDGIHLWNIEGLAAIHLTTLQGHQAWVWDAKFSPNGKVLATCSDDGVIKIWNINTGKCHH 640 
WD40-rpts      _______WD 1________________)     (_________________WD 2________________)   (____

Query      641 TLQDDSKRSWSISFSPDGKILASGSGDHTVKLWDINTGQLLKVLKGHINIVRPVIFSSDGKIIASGSEDQTIKIWDVDSG 720 
WD40-rpts      _____________WD 3________________)   (_________________WD 4________________)   (

Query      721 EYLQTLEGHLAQVWSVSLSEDGKILASGSADKTVKLWDVSTGECRTTLQGNQIDGVWSVSFSPSGESVVVAGEVPVISLW 800 
WD40-rpts      _________________WD 5________________)   (_________________WD 6_________________

Query      801 DIKTGECIQTFLGHIGRVWSVAFSPNGKTLASASEDQSVKLWDVTTGRCLKTLQGYSSRVWCVAVNANGQLLAANTNKTL 880 
WD40-rpts      )   (_________________WD 7________________)   (________________WD 8_____________

Query      881 RIWDISTAKCIHTLHGHTREICGTVFSSHETILASAGADGTIRLWDTITGKCLRTLQVNGWILSLAMSPQGNALATANTD 960 
WD40-rpts      ___)   (_________________WD 9________________)   (________________WD10__________

Query      961 TMAKIWDIKTGECIKTLEGHTGWVFSVAWSPNGQFLATSSDRCIKLWDVKTWQCIKTLEAHSGWVYSLDWSPDGQTLLSG 1040
WD40-rpts      ______)   (________________WD11________________)   (_________________WD12_______

Query     1041 SFDLSLKLWDINTGNCQQTLHGHTKIVLGAKFHPQGNIIASTGQDGTIKLWNSNTGECLRTLIGHADWIWAIAFHPNGQT 1120
WD40-rpts      _________)   (_________________WD13________________)   (_________________WD14___

Query     1121 LASGSQDETIKLWDVETGECLQTLRSPRPYEDMNIAGITGLTAAQKATLKALGAVESVATDG 1182
WD40-rpts      _____________)   (___________________WD15___________________) 

15 WD40-repeats found in QUERY=gi_186687001_ref_YP_001870390.1_ (Len=1182):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   551-588      6.80  395.54  0.00029       30.0%     49.20
  WD 2:  Seg 15   594-632      9.61  511.71  7.9e-06       45.0%     56.62
  WD 3:  Seg 19   636-674     10.39  543.70  2.9e-06       52.5%     57.48
  WD 4:  Seg 23   678-716     10.48  547.68  2.6e-06       55.0%     57.34
  WD 5:  Seg 27   720-758     10.70  556.83  1.9e-06       60.0%     57.57
  WD 6:  Seg 31   762-801      8.87  480.94  2.0e-05       50.0%     55.78
  WD 7:  Seg 35   805-843     10.71  557.24  1.9e-06       55.0%     57.13
  WD 8:  Seg 39   847-884      8.02  446.07  6.1e-05       35.0%     53.73
  WD 9:  Seg 43   888-926      9.57  509.94  8.3e-06       40.0%     57.91
  WD10:  Seg 47   930-967      8.23  454.61  4.6e-05       37.5%     56.59
  WD11:  Seg 51   971-1008     9.11  491.15  1.5e-05       52.5%     53.55
  WD12:  Seg 55  1012-1050    10.27  538.74  3.4e-06       45.0%     58.31
  WD13:  Seg 59  1054-1092    10.25  538.07  3.5e-06       45.0%     56.64
  WD14:  Seg 63  1096-1134    10.83  562.08  1.7e-06       55.0%     56.36
  WD15:  Seg 66  1138-1181     2.87  233.16  0.04396       25.0%     41.24

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  551-588    IKKSV--FTEY-L-------ASSLCVKFSPDGKFLVSTDANDGIHLWN
   WD 2  594-632    -AIHLTTLQGH-Q-------AWVWDAKFSPNGKVLATCSDDGVIKIWN
   WD 3  636-674    -GKCHHTLQDD-S-------KRSWSISFSPDGKILASGSGDHTVKLWD
   WD 4  678-716    -GQLLKVLKGH-I-------NIVRPVIFSSDGKIIASGSEDQTIKIWD
   WD 5  720-758    -GEYLQTLEGH-L-------AQVWSVSLSEDGKILASGSADKTVKLWD
   WD 6  762-801    -GECRTTLQGNQI-------DGVWSVSFSPSGESVVVAGEVPVISLWD
   WD 7  805-843    -GECIQTFLGH-I-------GRVWSVAFSPNGKTLASASEDQSVKLWD
   WD 8  847-884    -GRCLKTLQGY-S-------SRVWCVAVNANGQLLAANT-NKTLRIWD
   WD 9  888-926    -AKCIHTLHGH-T-------REICGTVFSSHETILASAGADGTIRLWD
   WD10  930-967    -GKCLRTLQVN---------GWILSLAMSPQGNALATANTDTMAKIWD
   WD11  971-1008   -GECIKTLEGH-T-------GWVFSVAWSPNGQFLATSS-DRCIKLWD
   WD12 1012-1050   -WQCIKTLEAH-S-------GWVYSLDWSPDGQTLLSGSFDLSLKLWD
   WD13 1054-1092   -GNCQQTLHGH-T-------KIVLGAKFHPQGNIIASTGQDGTIKLWN
   WD14 1096-1134   -GECLRTLIGH-A-------DWIWAIAFHPNGQTLASGSQDETIKLWD
   WD15 1138-1181   -GECLQTLRSP-RPYEDMNIAGITGLTAAQKATLKALGAVESVAT--D

   WD40 Template    TGECLRTLSGH-T-------SGVTSVSFSPDGKRLVSGSEDGTIKVWD