Input parameters:

  Query = gi_186687028_ref_YP_001870417.1_ (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186687028_ref_YP_001870417.1_, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKFFNFCQIGVPLISFALLGWIAPRANAALLVGSYNNNSVLRYEEKTGEFIDEFVPNGSGGLQGTTGLTIGPDNNLYVSS 80  
WD40-rpts           (_________________WD 1________________)       (_________________WD 2_______

Query       81 ILNGSIQRYDGKTGNFISTFVPSGSGGLDAPEDLVFGPDGNLYVTSINSRTSNSVLRYNGQTGAFIDTFVPSSSGGLTAP 160 
WD40-rpts      _________)         (_________________WD 3_________________)       (_____________

Query      161 FGLSFGSDNNLYVSSVLTDNILRYNGQTGAFIDTFATEAKGSEPGGLTFGADGNLYVANFVSNNISRFNGKTGAFIDTFI 240 
WD40-rpts      ____WD 4________________)(___________________WD 5___________________)          (

Query      241 PAGSGGLNDPLKPVFGPDGNLYVSGLNSNNVLRYDGKTGAFIDTFIPAGRGGLNGAGFLAFTEDNTIIPEPRMTLAVLAF 320 
WD40-rpts      _______________WD 6_______________)          (_______________WD 7_______________

Query      321 GATLGASKLLSRKQKSKILLG 341 
WD40-rpts      )                    

7 WD40-repeats found in QUERY=gi_186687028_ref_YP_001870417.1_ (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-44       5.87  357.17  0.00096        5.0%     45.33
  WD 2:  Seg  5    52-90       8.57  468.62  3.0e-05       30.0%     38.15
  WD 3:  Seg 10   100-139      6.73  392.55  0.00032       20.0%     39.09
  WD 4:  Seg 13   147-185      7.61  428.88  0.00010       20.0%     39.40
  WD 5:  Seg 17   186-229      7.53  425.65  0.00011       15.0%     51.02
  WD 6:  Seg 22   240-275      8.14  450.83  5.2e-05       25.0%     37.72
  WD 7:  Seg 26   286-321      7.25  413.98  0.00016       10.0%     37.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-44     -FC----QIGVPLISFALLGWIAPRANAALLVGSYNNNS---VLRYE
   WD 2   52-90     -DE----FVPNGSGGLQGTTGLTIGPDNNLYVSSILNGS---IQRYD
   WD 3  100-139    -------FVPSGSGGLDAPEDLVFGPDGNLYVTSINSRTSNSVLRYN
   WD 4  147-185    -DT----FVPSSSGGLTAPFGLSFGSDNNLYVSSVLTDN---ILRYN
   WD 5  186-229    GQTGAFIDTFATEAKGSEPGGLTFGADGNLYVANFVSNN---ISRFN
   WD 6  240-275    --------IPAGSGGLNDPLKPVFGPDGNLYVSGLNSNN---VLRYD
   WD 7  286-321    --------IPAGRGGLNGAGFLAFTEDNTIIPEPRMTLA---VLAFG

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT---IKVWD