Accession: EG_MAL13P1.148 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_MAL13P1.148 (Len=2160)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_MAL13P1.148, Len=2160):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEGANKCVIGTKIFIRDKNKVWASAEIINEDEDNIIVKTEDDDIIKLKETDEFYLRNLDLFDSSGLSAPSDLTKLTHLHE 80  
WD40-rpts                                                                                      

Query       81 ASILHSLNLRFDIDEIYTFTGPILIAVNPFKIIKDLYSDNMLAKHVQPIKSKSPHIFATSNSAYLGMCNNNKSQTILISG 160 
WD40-rpts                                                                                      

Query      161 ESGAGKTESTKYVMKFLACAGSDIKKRSLIESQVLESNPLLEAFGNARTLRNNNSSRFGKYIELQFSVDHKNYIKGKLCG 240 
WD40-rpts                                                                                      

Query      241 AKILTYLLEKVRVCDQQEGERNYHIFYQLCKAVKEANIVDNSIMSNNENDDVENYVNYKCDEDKNKDHIENNICEEPTQK 320 
WD40-rpts                                                                                      

Query      321 KKKWYHFPSTSKFRNLENVEPMKIDFTDFKEHVHFRYLTKSSVYELNEVNELEEFESTVHAMQTIGISNTEQYQIFKILE 400 
WD40-rpts                                                                                      

Query      401 GILYIGNILFNNDETKEEATILEVSNDDLRKAAYFLDIDENDLINSLCYKTIVANNEHYKKPVNSNVANDIRDALSRAIY 480 
WD40-rpts                                                                                      

Query      481 GCLFLKVVERTNESIGYIKDINLFCGVLDIFGFESFPVNSFEQLCINYTNECLQQFFNNFIFKCEEKLYMEEGIRWDPLD 560 
WD40-rpts                                                                                      

Query      561 FPDNKDCIDILESKPYGVFCMLDEECYIPSGRDKSFCSKIISKHTSSSNNNQSNKRFKSIKTDSSSFIIVHFAGQVVYNS 640 
WD40-rpts                                                                                      

Query      641 TGFLEKNKDQLSLDAQKLLLHSKNTYVSHLFETYLRRNTDKRKFVTVSSEFKEQLNLLMTRIKETEPHFIRCIKPNAQNV 720 
WD40-rpts                                                                                      

Query      721 PDVFDRISVNEQLKYGGVLQAIKVSRAGYPVRLSHAECVQDYKILLNKEDRHKLEMYNKDNKSWSYKANFILSSLYVTKE 800 
WD40-rpts                                                                                      

Query      801 IQEYINNLKLLKDKKKEEENKFFGKLSSKKNKKMQDTTTTMNEVSNNVQINNKDETNNNNNNMKDIVYDPVCGDANEEEE 880 
WD40-rpts                                                                                      

Query      881 KNNLFIWSVGKNLCFFKSDAYNILSTLRSDLRSLKAIVIQKNYKTYTQKKLYELMKRKIIIIQRWFRNRLNIIRKEKLKR 960 
WD40-rpts                                                                                      

Query      961 QEAEKLICSYIYTYIIRKRFLHKRNCCILIQSHIRRYLMVRFYKTYRQNYYASKIQATWKAYKEHLFYKKLLKSTKKIQL 1040
WD40-rpts                                                                                      

Query     1041 KWKSILARKQLRRLKMESKEVGSLLSRNQVLMKELKKEKNEKIEIESKLLKASAKIDKLIKKIDNLEKDNKNNEKVIKDL 1120
WD40-rpts                                                                                      

Query     1121 LEKVSLLSYKQSNECISPRHVSKKNENIKQKKNNKELNKDIIMSLKREDTEHVDSMEIMSIQGNNTHDDPNNVRNCYSTD 1200
WD40-rpts                                                                                      

Query     1201 TNLTNYLNNNKSNNNKDHNNDHNNNNNDDGDGEDIYMDNNLTFTQEKIGDLKIRNTIRNEKNEEKYNLLNKIKKLEIQNK 1280
WD40-rpts                                                                                      

Query     1281 EYIKQNVTLNDKYNKLVSLLGQIKDTNNNVYNDVLINNINNYHSNGMSNKLLLNNYNNYHNNNNNNNNFFKNLTNLSSCN 1360
WD40-rpts                                                                                      

Query     1361 SNSLIEPKIENNINYDNKSSFKKNDGIVDILVCGPRNVGKTSLLEDLFVRLGDEDNLGLLRKNKKLVNNDLSCYNYYNTY 1440
WD40-rpts                                                                                      

Query     1441 IITHKCSQIKIVDCGYSSNKNVEESLFNYIKNSICIIVVFDATNKESINPAVHLLQEASLINVKKTTKLYLFENIFNEKI 1520
WD40-rpts                                                                                      

Query     1521 NLNFNKNDVSYAVRVSKACNASYVKALDIYDIVNNYANKITLHSNYFLDNTHNNCNYNNNYNYNYNHVTSVPPNQHSEHN 1600
WD40-rpts                                                                                      

Query     1601 NNNYYHNNKEKDNDNDKDKDIYVKGLAHLNHMNKSKRNTHSYMSSYHEESLKDSDDAALSSFGNKSNDLIKSKRGDIGKN 1680
WD40-rpts                                                                                      

Query     1681 KYNNNNKNNNSSNNNNNNIYSVVNTLKAICGIQNSNKKNQQIQLLRESMPLNNYIYGNKKYNSDLGKGLQPVYEITLKGN 1760
WD40-rpts                                                                                   (__

Query     1761 IPITYLCMGQDNINKNYTLLSVGCKDGVIYIYKCFRTSLELKNDYFYYYNDDSSMYNMNNNMDKNVNNVYNNMDKNMNSN 1840
WD40-rpts      _____________WD 1_______________)                                               

Query     1841 TTLNIQNNDNNNNNNNNIVGCDDNVKKSSSIMSLKNDSNKTYDESSTCTKLLSKLSGHKKAITCLVFSFSEDKIISSSID 1920
WD40-rpts                                                            (______________WD 2_______

Query     1921 RTIKIWEVSTGFLLKVFSDSSATLSVLLFPTNLDIFLCSNCTSLLRIVNLNSGQVYQKIKVESEIRALEMDDTCLNIFAG 2000
WD40-rpts      ______)                                                                         

Query     2001 SKNGTIYVLEVIYNERVEIKFRFLFSLSPITCIKFIPRHSVKTSPAIIVNSCDNHIGIIECVYGNKGILTTLYVKHRIRI 2080
WD40-rpts                                                                     (________________

Query     2081 NHALLPIRNCYSRFGGGWVMSGSEDGNIYICSLLPQSNYKLIFLKHHKAPVMAVVVNNIDTLMVSGDSKGNIVFWRRSFV 2160
WD40-rpts      ______WD 3_____________________) (___________________WD 4__________________)

4 WD40-repeats found in QUERY=EG_MAL13P1.148 (Len=2160):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 24  1758-1793     3.03  239.82  0.03590       17.5%     25.94
  WD 2:  Seg 28  1895-1927     7.09  407.66  0.00020       35.0%     32.79
  WD 3:  Seg 43  2064-2112     3.97  278.50  0.01094       22.5%     31.74
  WD 4:  Seg 46  2114-2156     5.33  334.77  0.00192       27.5%     43.21

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1758-1793   KGNI---PIT---------YLC----MGQDNINKNYTLLSVGCKDGVIYIYK
   WD 2 1895-1927   -------------------LSGHKKAITCLVFSFSEDKIISSSIDRTIKIWE
   WD 3 2064-2112   GNKG---ILTTLYVKHRIRINHALLPIRNCYSRFGGGWVMSGSEDGNIYICS
   WD 4 2114-2156   LPQSNYKLIF---------LKHHKAPVMAVVVNNIDTLMVSGDSKGNIVFWR

   WD40 Template    TGEC---LRT---------LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD