Input parameters:

  Query = EG_MAL13P1.245 (Len=706)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_MAL13P1.245, Len=706):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKELYVDSYIGFKGNISNNLILIRKEKEIDKKYYKEQLKYIEEEEYLENEKKKKLKSVYNLKNIDINHNYYELKREELK 80  
WD40-rpts                                                                                      

Query       81 YNFFMIYAIGTNIIKENILDNNRTIFKSDESEINKLYVDKNKKYICCCKESKLISNIYIYDFENKKKPIILSLHKFRTVD 160 
WD40-rpts                       (___________________WD 1___________________)   (_______________

Query      161 ISISNDGKYLLSSGGHDDKYLILTQIENQKFIYKCLSDYPYTNISFFHKTNNFVIAKLNSIKICYYDFSKKLISEEEVNT 240 
WD40-rpts      ___WD 2_________________)   (________________WD 3_______________)   (___________

Query      241 SIYKRQFVCLELKENDEYAYLGTTTGDVLVVNIKSKVLEKIIPENYLFGNGLNVIKILDDNTIMTGSGDGYISLIDIEEK 320 
WD40-rpts      _________WD 4____________________)   (_________________WD 5________________)   (

Query      321 KVLRKTKLYGSINSIEMRNKSTLFISIYENIIYVMDLINNNHYVLLLIHNHYVNDLCFPFNYNYIMYTCSYNSVMAWQFY 400 
WD40-rpts      ________________WD 6_______________)   (_________________WD 7________________)(_

Query      401 DKKAIYLKNIDKGKFIYYDKKFLNIPTEKRKKLCKLNLMHESKINNSLENKKKKNSLQNYEKINKNLICHSIKITNDGNY 480 
WD40-rpts      ________________WD 8_________________)(_________________________WD 9____________

Query      481 IALSIHNNIYLLTSKYMKIITVILNSHYDFCNVLIFYNKYDLITAGNNGDIKFWKFDKGKYLNVNTINYHSSIINQIILY 560 
WD40-rpts      _____________)   (________________WD10________________)(___________________WD11_

Query      561 ADKYLCSCSEDGLITIYNIQESTLFKKIIDINNTRYKQISLNNQYDILLCCGNNNIFMYYDLIKYDISKNFYYSPFHNVL 640 
WD40-rpts      _________________)(___________________WD12__________________)(__________________

Query      641 SLDIDKKGNYFITGSDDYKIRLYEFKSCTCLYIGVAHNNVIHKCLFTFDNMYIVSASKDESIKKIK 706 
WD40-rpts      _WD13__________________)   (_________________WD14________________)

14 WD40-repeats found in QUERY=EG_MAL13P1.245 (Len=706):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9    98-141      5.96  360.80  0.00085       17.5%     51.74
  WD 2:  Seg 13   145-185      7.37  419.30  0.00014       30.0%     48.09
  WD 3:  Seg 17   189-225      3.93  276.80  0.01153       15.0%     53.44
  WD 4:  Seg 21   229-274      2.92  235.24  0.04127        7.5%     38.25
  WD 5:  Seg 24   278-316      7.05  405.76  0.00021       22.5%     48.50
  WD 6:  Seg 28   320-356      4.38  295.57  0.00646       20.0%     54.04
  WD 7:  Seg 32   360-398      7.58  427.81  0.00011       12.5%     55.71
  WD 8:  Seg 36   399-438      5.45  339.70  0.00164        2.5%     30.33
  WD 9:  Seg 40   439-494      5.53  343.18  0.00148       10.0%     47.21
  WD10:  Seg 44   498-535      5.93  359.62  0.00089       20.0%     56.38
  WD11:  Seg 48   536-578      6.81  395.99  0.00029       27.5%     57.02
  WD12:  Seg 52   579-621      6.82  396.31  0.00028       10.0%     57.88
  WD13:  Seg 56   622-664      7.10  407.87  0.00020       17.5%     56.08
  WD14:  Seg 60   668-706      8.12  450.19  5.3e-05       27.5%     53.62

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   98-141    ILD----N----------------NRTIFKSDESE-----INKLYVDKNKK--YICC--CKESKLISNIYIYD
   WD 2  145-185    -KK----K----------------PII-LSLHKFR-----TVDISISNDGK--YLLSSGGHDDK---YLILTQ
   WD 3  189-225    -QK----F----------------IYK-CLSDYP------YTNISFFHKTN--NFVI--AK-LN---SIKICY
   WD 4  229-274    -SK----K----------------LIS-EEEVNTSIYKRQFVCLELKENDEYAYLGT--TTGDV---LVVNIK
   WD 5  278-316    -LE----K----------------IIP-ENYLFGN-----GLNVIKILDDN--TIMT--GSGDG---YISLID
   WD 6  320-356    -KK----V----------------LRK-TKLYGS------INSIEMRNKST---LFI--SIYEN---IIYVMD
   WD 7  360-398    -NN----H----------------YVL-LLIHNHY-----VNDLCFPFNYN--YIMY--TCSYN---SVMAWQ
   WD 8  399-438    FYD----K----------------KAI-YLKNIDK-----GKFIYYDKKFL--NIPT--EKRKK---LCKLNL
   WD 9  439-494    MHE----SKINNSLENKKKKNSLQNYE-KINKNLI-----CHSIKITNDGN--YIAL--SIHNN---IYLLTS
   WD10  498-535    -KI----I----------------TVI-LNSHYDF-----CNVLIFYNKY---DLIT--AGNNG---DIKFWK
   WD11  536-578    FDKGKYLN----------------VNT-INYHSSI-----INQIILYADK---YLCS--CSEDG---LITIYN
   WD12  579-621    IQE-STLF----------------KKI-IDINNTR-----YKQISLNNQYD--ILLC--CGNNN---IFMYYD
   WD13  622-664    LIK-YDIS----------------KNF-YYSPFHN-----VLSLDIDKKGN--YFIT--GSDDY---KIRLYE
   WD14  668-706    -CT----C----------------LYI-GVAHNNV-----IHKCLFTFDNM--YIVS--ASKDE---SIKKIK

   WD40 Template    TGE----C----------------LRT-LSGHTSG-----VTSVSFSPDGK--RLVS--GSEDG---TIKVWD