WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: EG_MAL13P1.285 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_MAL13P1.285 (Len=2012) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_MAL13P1.285, Len=2012): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVKNVYIYFVYLVYLFHMFSLSLRMQKNIFKYITPLSNRFNLTKIRKLKLFRKEKQKKQVRVFNHVVNNYIGLDLFFTKL 80
WD40-rpts (______________________________________WD 1____________
Query 81 NNITSNHEKLNYINFLQQIVEDKAYEHLLFSNNYMRIIIYILNEKCLVIKKNEEKYDDLDYEIIYRILLIFKNLTRYKSF 160
WD40-rpts _________________________)
Query 161 YHVILNDYTHKNKKISLLYTLMNILNEKNDFNNYSNNNFDKYKEYNSIFNYFTSFFKNAEDTKNYMTQDSSTELDSKMKN 240
WD40-rpts
Query 241 EEQEENEKINEINKMKNKIYDIGRNILLKLKDEKLKVENKINSQYVRGSNHFTNETSTDLKSTKDQEDILLEEKKKSDDE 320
WD40-rpts
Query 321 YVDKDNYNTTENNFKQEHMNITHKNQNNQDHLYDDTPQNDNISNVDDNKNINGIGKISNVIDPYNKENEITKNDTKELFL 400
WD40-rpts
Query 401 KKQSDILFVPFYFNKNTKDNILTSIIINFLNKENIIVSKKKIKNVKGKGNIIDHIGPDYNCNNYFDIYENFVEDDKDILK 480
WD40-rpts
Query 481 YEKNNNINTLNNNNSVQNVNKEYKSYEDDQFEYEIEDEEEYSNDDDFNEKKEEDKKIYERKLDENDINIIFNEYKYESSK 560
WD40-rpts
Query 561 LKIYNENKTNSINMGLMILIRKNNVHTNTFVNMHHHNNNDIEKSINNKNQDSTNSMKNIEISSDKEYNKINDTNQIYEDI 640
WD40-rpts
Query 641 YVKSHDQIDRKETDNYVLNGFIKSNLDLLKPFNINDEDDTTTTTTTNNNNNNNNYSNNNNYSNNNNMITSECLDISNNTC 720
WD40-rpts
Query 721 IDIKSPYLNFVLLKNYIESLFTHINLNDYFTNKLLKLLYEILIENKNSIIYNLYYYTILKDENIKKVTHILSKNVKNNLN 800
WD40-rpts
Query 801 KANTTLLLRIFYIMCFQKSFYINTAMHYKTNEKYAYLYKNIAKYIQDIKEGQFIKQLQKQEDIIECLKNLSHFFENKYKN 880
WD40-rpts
Query 881 QNSFYISDVNKDQYLYEKKIFKKKLNNIYNRHFICEYKDLIIIRKTNIILKSLGVNMYDLYNDIIFLDREKKTHEYLMKE 960
WD40-rpts
Query 961 NYIKKNIINYINDVFFNIFNKFKNLFTYQYKEEPPLSVTPNKTTNSNNLFNENRNQTNKLKTNDNVSKDDNQIKPMGNKN 1040
WD40-rpts
Query 1041 NISSLDTKSDQNINNNNSNNTSNLNSNMNSHRNNFKNDSDFISSSNIGHVKKENRTVIYNLNNKEYISFDKFKNIVIDLK 1120
WD40-rpts
Query 1121 KKKKRKLRILCLDGGGIRGLLSIEILKYINSNLNKNIFEYFDIICGTSTGAIISILIGLEKAHLNEIEFLYNLLINKIFQ 1200
WD40-rpts
Query 1201 KDTYAVRNTRYLLKHSYYDSNILNNILNSFFKNIKMFHYNSDFYTPYVFTVSTQMNITPLQPVILKNYNGNLYKIRESSV 1280
WD40-rpts
Query 1281 MENNKNINYNNENNDESDGENNNTPYNYTNGSYDNNENITQTNNSINSVYDTINDNNLDNNSNNDIHINQNISNVSIYKS 1360
WD40-rpts
Query 1361 FYNIFVKYVLRCTTAAPGFFNFFSFDNNIYADGAICFNNPTLLSLNELKIIFYNYINRKKTSFMDKLKCYFFHKNKSNDN 1440
WD40-rpts
Query 1441 EKNKTKDVINMNDYIDCIVSIGTGKFKPKVINELNENKSYDTFLRWDVLLKQIVYSITNTELTHDICNNLLDKNKYFRFN 1520
WD40-rpts
Query 1521 CFINNIKLDETSPEIIMKLKQIGKRYFEDHKYNQQKLIRLINILEDKEELKKYEEKKRKYIWNDLYNNSIKSKISNFIFN 1600
WD40-rpts
Query 1601 NNKLNSDSSFMNNSFLLSKNNHINNSQTENRKDSLKKNSLNDTKNNDNIDTNNNNNKKKKKLIPPYLNFNFNLMEEGDKF 1680
WD40-rpts
Query 1681 DLNNIEEILDMIYKNNNSFTKNNTSSSSSSSGFINYFTKLFSNNNLFLEKLESVNKSNIFNRNKNEKNNYVNVIPNTGIR 1760
WD40-rpts
Query 1761 ILLNEIYFILLKKNLYFHTDEYNNLTYMNNNDDDLNIDRMITYDNKNTPNISSTKGTDTDINLKNENQTGPNQTGPNQTG 1840
WD40-rpts
Query 1841 PNQTGPNQTGPNQTGPNQTGPNQTGPNQTGPNQTGQNQTNDNQSKKSDEYIKDNKNKTMEDDLNLSCITDHEGTDKNIND 1920
WD40-rpts
Query 1921 GTFFSENQNDEQKNYSDNIHNTSDNLIDDELIHSDNTVNLTNNPNINKNRNSKFKTDSNQGNYEFFNSEHNSNNKKITIL 2000
WD40-rpts
Query 2001 DLLRCFFFKKET 2012
WD40-rpts
 1 WD40-repeats found in QUERY=EG_MAL13P1.285 (Len=2012): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 26-106 3.07 241.42 0.03419 5.0% 12.86Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 26-106 QKNIFKYITPLSNRFNLTKIRKLKLFRKEKQKKQVRVFNHVVNNYIGLDLFFTKLNNITSNHEKLNYINFLQQIVEDKAYE WD40 Template TGECLRTLSGHTSGVTSVSFSP----------DGKRL--------------------VSGSEDGT-----------IKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |