WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_MAL13P1.301 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_MAL13P1.301 (Len=3179) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_MAL13P1.301, Len=3179): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKTQTLSLMNINGKRKFLGTNNKIYRKVIINPTSEDDIQKFCRNYFRIYNFSLYNFIRRLISFDAILVYSLFLTVYIFSE 80
WD40-rpts
Query 81 INHGETKKYLFIDTAISLFFNIILLIVIESLFELKKLKDVKNANSQYYLRIVPKMSYFEKVMTKDIKVGNIIRIFQGDEF 160
WD40-rpts
Query 161 PADVVILYVKNNANAIVDSFKIDGLFRKSIKYAVDKYKIDKDYLKMLSEINGVIRCELPNKNIFCFQGNFKLDKHPRSLL 240
WD40-rpts
Query 241 LNYENFALQSSVLKGAEYIDAVVVYTGADTKKNLNIPQKIEENKTFCIKMNNIVYYLIFMYFVFVVLSIVIKTIFFHKKN 320
WD40-rpts
Query 321 SFQNSRDSFLSMLEDFVGLYILVLPIMMYSEKSLIYIIQSLRIENDLRMRNTDSEKPKVFNKNKNDSLGNVDLLATSRNG 400
WD40-rpts
Query 401 VLVKRKELLVSCVINNVMYGKKDIICSRTNFKLPTLNILDSERKNVSNLLNLDERIFKDPENIFFPTRDFYSFLKLFENK 480
WD40-rpts
Query 481 ISSIYNPYSSSLSNLLKEKYKNYVNEEILNKNVKLTSFVKSQLTIGYNQICEDDELSYNCYEIKEDSQKENIQSVKIEDF 560
WD40-rpts
Query 561 ILGLCGCNRIIIYNEKSLDISMNEYKSDNFMETYSKFETENEEYHENDHDEYHNMEHSDDENINSIEYEDICLYNIIRNT 640
WD40-rpts
Query 641 GFSIYCYKNTLFLYNLMKECKVYFLTCYHDFLRSNKFSMCILKCGYSINNEKEGGILYVRGYDFNILPYISKEKNNIKKI 720
WD40-rpts
Query 721 KNVIKIYTLNYLKVIILCKKQISNEDIAKYIILKSISKKLSFKFYDLIKLFFLYDLEVIGIIGLKNQLREGVKETFNDVI 800
WD40-rpts
Query 801 NFDIKSWIFANECSKDTYLTALQCNLIVSSSNLFLINYYNLKNTHEEGANILFHNFISSLYKLKSNSYAVVINDESIKNI 880
WD40-rpts
Query 881 MTNVESMKIFLCIAMRATVVLFCKLQNETKGKIIRTLYALTSPKLTVLGIGTTLNDAYLLKYSSISVFLSLNEHVNILYN 960
WD40-rpts
Query 961 ISDYVLQEFKFISELLILGRLNRFSLCKVFLWIIYLKITVVSFYFFHNFDNYFSGSSASSILYTQTTFALLHYFLIIAFS 1040
WD40-rpts
Query 1041 AYEIDLPYKFVRRLPYIYQLSRRKYFLNNNIILLTIIEAILISLTSYYILRLNVFHLITHREFTFHIFILNVFITTEKIL 1120
WD40-rpts
Query 1121 LLSKTWHIYFFIMAVLIIGILLIYVNIFTLVDCIKNGKCEFSLFQMENIYFWTSLFPILYINFIFDKLMKYIKNRIYPDI 1200
WD40-rpts
Query 1201 SDYLRKYFLRRICCHNNDKFLSQRKIKGINKFVNFEKNDILLKYIPTPKIYKIKDDPTYYNKSKRSKFLYDTFRKVIDIN 1280
WD40-rpts
Query 1281 VKYRNQQLNLEYKTYEKGNKLKLRIIVILLFLIYIIIFSSQTIIDINTKSNIHYITMFYIIYFVLACVLLIYIRIRNKAT 1360
WD40-rpts
Query 1361 STFFFFLSRFLLICGFCIELYDNISNDILNVLITYSFTVSYIFFMSFKILEALLVCISILLLTFGVYYEKNKNMIDICTH 1440
WD40-rpts
Query 1441 FCSNPYLSINNLDHMNISCLCKKQIVIFLISLLSFTLICLSMKYYEIFYLKKKFLFRYKQKVNLAKQIEILHTMLPNFLV 1520
WD40-rpts
Query 1521 EYLLISDPKNDGIMVGKNISGEDRGIISVIFCDIDDFQNMVSTLQPHVLVETLDNLYLYFDKCIKYFNCIKIETVFESYL 1600
WD40-rpts
Query 1601 AASGLSEKKNNALDKIMYDTKCAIKLAIAQLSAKYYISYKVLDTREHFSDNSTSYDKYINKNISLKIGIHTGKAISGVIG 1680
WD40-rpts (_________
Query 1681 SVKPQYALFGDTVNTASRMKSTSLPDHIHVSYDTYKYLKEDNTFIWKERKVFIKGKGKMKTYLLVDILDDVKRKGESLNY 1760
WD40-rpts _____________WD 1______________________)
Query 1761 YSSSNLLLSQLGSEAVSIYEEREDIKEGSMDIIKESSRDIIKEDSRDIIKEISTNISKSSSRNISKSSSRSISDIKEGQI 1840
WD40-rpts
Query 1841 IDKEDLIFKINRMKNKIDSRYSKRIDKESRDKISDKTNHVLDEVVKHSDIHLLNYEINNKRCKKMKGDTNNENKLIGDIF 1920
WD40-rpts
Query 1921 NMYDKKIKYIYKKNYKSKSMENISFIKHYRNTKYKKSDYLLLDNKGESKKFKRNTSYVLESPLHLIGDIVDNNIKRKKKK 2000
WD40-rpts
Query 2001 KEIKTIVSDDMFTSPVNIKEYNYNEQERKKEIVGNLSYDKTKKIFPFIKFTKEGRIKKKKIEKKEKKEKKENNNNFLYND 2080
WD40-rpts
Query 2081 DYSSYSSPKYGDNENNFVIKYIRERKDFQKKFDHPNFNFSKFLHNYNPMKNKNKNKKNNKNVRRNEYPNYTSSSKDGVSY 2160
WD40-rpts
Query 2161 NFLSDSLFSSDNEYSSDNEYSSDSEKYYKKRFKKNKKIIKFDDLFTKIYIKKKRLLQMNNYDVKGKGKKLKNKGMERNKT 2240
WD40-rpts
Query 2241 KYKNVNEITKMKYFVNNENRDHEVNKEDISKSMQKYFLHISKHKKEQIEDKKKTHKYFHKNVECVYPYAGNNINHNFSRN 2320
WD40-rpts
Query 2321 EKRKYSINLYDHLDEQEKIKGKKKYFNKDKELIGSINKQTERKPKKKNKKNIENKKDKKKIRMITNKTKEKHSNSIISVE 2400
WD40-rpts
Query 2401 EQNMNHNNSLKKKEVNFTGKNEEYLNRANTNCSLGIKEMEEDVYEFHSNNIYYNNQTSYSDDINNTTKLKGMGNNTNDIS 2480
WD40-rpts
Query 2481 KNKGKNKLGKKISFFSMNNKYHESEIMNEEDNKNMLNLTQSQIINKDKYNYFTHCPSLKKKKSVFTKINNLFKNYFKSID 2560
WD40-rpts
Query 2561 VHEKFGFSKKFKFHSKDSDDIKGNNNKISKNRYNNNNNNNNSNYSNIDSGKYSHNNKKNHHHNNNKYHHHNNNKYHHHNN 2640
WD40-rpts
Query 2641 NKYHHQNNNYEKHHHSNNSRVMLSKGEKTEKNENVDYAYQFDNYDKKLLKKLTSNLQLNKKNVKNFNMFYYKFNDEELEE 2720
WD40-rpts
Query 2721 EYTRNYYREIINIDLTKKLIIIFIFTEIFLSLCNIIELSFYEKKLRYNDSIVIIWLIRSIYLFIITYIWIILKTKLKEYK 2800
WD40-rpts
Query 2801 NNSSKMMWTIFILNIFLCSWGIILIDLSCIHYSMLLGNKNERALFFMKDASELIICIQLIFIKNMLFKHKFFFFVFFYIF 2880
WD40-rpts
Query 2881 LIYSFSKLFSIHTCQTHICCSIILFISINILYFWYSEYLDRIQFLVKRKRNRMEKISQDFLTKILPRQVLEEYQNDNLQL 2960
WD40-rpts
Query 2961 TYKHEKIAFLFADIVGFTKWSKTVSPKEVLKLLQKLISKIDKDTIKLGLYKLFTIGDAYVATSQPNSSITDESEALEGIL 3040
WD40-rpts
Query 3041 NILKLAKLILHNINTIKIQFNKHDFNMRIGLHYGSCVGGIIGSVRIRYDMWGLDVLIANKIESNGIPGEIICSEQFRHFF 3120
WD40-rpts
Query 3121 IQNEPQAKLNFWYYKSISINDQDIKLYVIEDKNYEEDYDPKVIDYTTLLKLRQKKGLRS 3179
WD40-rpts
 1 WD40-repeats found in QUERY=EG_MAL13P1.301 (Len=3179): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 37 1671-1720 2.82 231.02 0.04691 20.0% 15.59Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1671-1720 TGKAISGVIGSVKPQYALFGDTVNTASRMKSTSLPDHIHVSYDTYKYLKE WD40 Template TGECLRTLSGHTSGVTSV--SFSPDGKRLVSGSEDGTIKVW--------D |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |