Input parameters:
Query = EG_MAL13P1.325 (Len=197)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (EG_MAL13P1.325, Len=197):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVSKKEARFYLSNHLDNINSAIFYEENKGLLKLWDIIHDTSITKWNVNNFIFVKPYRINNDHIVTPIKHDRDIAIYDIKI 80
WD40-rpts (_____________WD 1_____________)
Query 81 KQENRYKQVENVELIYINSESNNNNNNNCFGYNKVGAINKNKLSYTKIQMMIPNFLETFFLNNMNNTVLCYHINNNNYVV 160
WD40-rpts
Query 161 SINNNVLYHIIIGKDQKFYTKNVIQKKKKKFNNIVIL 197
WD40-rpts
1 WD40-repeats found in QUERY=EG_MAL13P1.325 (Len=197):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-35 3.44 256.95 0.02125 25.0% 35.69
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-35 KKEARFYLSNHLDNINSAIFY--------EENKGLLKLWD
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD