WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: EG_MAL13P1.325    [Plasmodium falciparum]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = EG_MAL13P1.325 (Len=197)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_MAL13P1.325, Len=197):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSKKEARFYLSNHLDNINSAIFYEENKGLLKLWDIIHDTSITKWNVNNFIFVKPYRINNDHIVTPIKHDRDIAIYDIKI 80  
WD40-rpts         (_____________WD 1_____________)                                             

Query       81 KQENRYKQVENVELIYINSESNNNNNNNCFGYNKVGAINKNKLSYTKIQMMIPNFLETFFLNNMNNTVLCYHINNNNYVV 160 
WD40-rpts                                                                                      

Query      161 SINNNVLYHIIIGKDQKFYTKNVIQKKKKKFNNIVIL 197 
WD40-rpts                                           



1 WD40-repeats found in QUERY=EG_MAL13P1.325 (Len=197):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-35       3.44  256.95  0.02125       25.0%     35.69
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    4-35     KKEARFYLSNHLDNINSAIFY--------EENKGLLKLWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019