Input parameters:

  Query = EG_MAL13P1.385 (Len=648)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_MAL13P1.385, Len=648):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIGDVLHDYKLYDNTKKKSSEMVINENDNKERLLEEFEIRSKVRKVCLGIPTQDIDVKNILRLLKEPICLFGEDSYDKR 80  
WD40-rpts                                                                                      

Query       81 KRLKNILITKYDRLIIKKKIEEEDDVEEFKNILKRYYIDFSDLYPSGLSEANKINEVHDKHKLKDVHDTKEEQNVHMKTV 160 
WD40-rpts                                                                                      

Query      161 REEDKDILKEKCYTEGTKDLKKSRIEITIKTLPRIFLYKEMINKFQNGYSKKEYENYITSFNEHIKKESDLYVSQLGDDR 240 
WD40-rpts                                                                          (___________

Query      241 PLTMGKFSPDNSVFAISSFNSYINIFNYRNDDYNLIKTLKNGHEEKINCIEWNYPNNYSYYSTMNYKDLSKHDLLLASCS 320 
WD40-rpts      ______WD 1________________)                         (________________WD 2_______

Query      321 SDKSFCIWKPFYDEYDDTNDNINDNINEYINENINENINENINENINDNISDNTSDTISDNINDNINDNISDSISDNISD 400 
WD40-rpts      ________)   (_____________________WD 3____________________)   (_________________

Query      401 NKNNNSHKVDKYNSNKNKLSAQNKNYLLCKVNAHDDRINKICFHPLNKYVLTCSDDETIKMFDIETQQELFYQEGHNTTV 480 
WD40-rpts      WD 4________________)   (_________________WD 5________________)   (_____________

Query      481 YSIAFNPYGNLYISGDSKGGLMLWDIRTGKNVEQIKMAHNNSIMNINFNPFLANMFCTCSTDNTIKIFDLRKFQISCNIL 560 
WD40-rpts      ____WD 6________________)   (__________________WD 7_________________)   (_______

Query      561 AHNKIVTDALFEPTYGRYIVSSSFDTFIKIWDSVNFYCTKILCNNNNKVRNVDIAPDGSFISSTSFDRTWKLYKNKEYTQ 640 
WD40-rpts      __________WD 8_________________)   (_________________WD 9________________)      

Query      641 DNILSHFM 648 
WD40-rpts              

9 WD40-repeats found in QUERY=EG_MAL13P1.385 (Len=648):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   229-267      8.01  445.53  6.2e-05       20.0%     46.55
  WD 2:  Seg  6   293-329      6.86  398.16  0.00027       17.5%     31.27
  WD 3:  Seg  9   333-379      5.70  350.01  0.00119       10.0%     30.21
  WD 4:  Seg 12   383-421      6.93  400.81  0.00025        5.0%     35.40
  WD 5:  Seg 15   425-463      9.40  502.86  1.0e-05       27.5%     53.19
  WD 6:  Seg 19   467-505      9.76  518.01  6.5e-06       32.5%     54.44
  WD 7:  Seg 23   509-549      7.11  408.56  0.00019       25.0%     47.30
  WD 8:  Seg 26   553-592      8.57  468.75  3.0e-05       35.0%     56.20
  WD 9:  Seg 30   596-634      9.44  504.79  9.8e-06       30.0%     55.72

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  229-267    -SDLYVSQL-GDDRPLTMGKFSPD-NSVFAISSF--------NSYINIFN
   WD 2  293-329    N---YPNNY-SYYSTMNYKDLSKH-DLLLASCSS--------DKSFCIWK
   WD 3  333-379    -DEYDDTND-NINDNINEYINENI-NENINENINENINDNISDNTSDTIS
   WD 4  383-421    -NDNINDNI-SDSISDNISDNKNN-NSHKVDKYN--------SNKNKLSA
   WD 5  425-463    -NYLLCKVN-AHDDRINKICFHPL-NKYVLTCSD--------DETIKMFD
   WD 6  467-505    -QQELFYQE-GHNTTVYSIAFNPY-GNLYISGDS--------KGGLMLWD
   WD 7  509-549    -GKNVEQIKMAHNNSIMNINFNPFLANMFCTCST--------DNTIKIFD
   WD 8  553-592    -FQISCNIL-AHNKIVTDALFEPTYGRYIVSSSF--------DTFIKIWD
   WD 9  596-634    -FYCTKILC-NNNNKVRNVDIAPD-GSFISSTSF--------DRTWKLYK

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSPD-GKRLVSGSE--------DGTIKVWD