WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: EG_MAL7P1.19 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_MAL7P1.19 (Len=3893) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_MAL7P1.19, Len=3893): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKKYLLFENSQYSYIINSIKNGDESEMLAALNDFYEQLNLSADGGLSNSTLEEYMNVLIHVIKSPHISYNSVYGRNENNN 80
WD40-rpts
Query 81 NNNNNNKKKNVKNSTNDKKGNSSERINEVVGSGINSFFKIIQEHMGVYASDFDEGEESESDFSGTKEDKKKKKKKKKKKN 160
WD40-rpts
Query 161 KEKNKSSNNNNNNNIKEKKNLLELLNVKEEDFINEGDKNCEEDVKDEDKENNSDNNKNDDKKKKDNKKKKVDKRNENKNE 240
WD40-rpts
Query 241 NESSKEDDEKGLDKVPKKKKSKEKNVSKENNIKTEIIINSEEESEEDYSYSDNMSDNNSSSSTSECTIESENEKFFLSNI 320
WD40-rpts
Query 321 NCVDVKYITIIYTATCCIYTILDIYPNSIKYIINNKEAVYILNKKLNDIEYIDVAEVILKIFEKLVEKDPMLILKKKSIK 400
WD40-rpts
Query 401 YMLMHIDFYNVNIQKKIFFCIIQMINNITKYRHITKYITPYCNIFINFFHYHYIHILNIICTLWRSFLDKMITLRLEEER 480
WD40-rpts
Query 481 LAMEDMLGICRNKKDNERTSYLSKLIEKKKDKKKSKKKNGNINANVNILDDGVRPEKRKTKGNNIKVTPIYDNDIIEISD 560
WD40-rpts
Query 561 EDESVNLMDKNIRKKGSVSGSKGKRKKTTSNDKIRGEDINDVVVTNESFQDCNNKSNSNNNEDMEDNNNNNNNNNNNGDK 640
WD40-rpts
Query 641 SKSRDRNKLKTNYNNKLLLNMIHLNSDDNIYYKLSSEIESIYNINIRDNIIKLLIECQIEDNLYAFMETFYIISILVHYS 720
WD40-rpts
Query 721 NNVLEDFCKSEFLNRFNEFFGNKKFRSNNFLIIYILFTLYSFLPMCTYNGKLIYEYDNKRDIKDEIFYENIGEFINDEIT 800
WD40-rpts
Query 801 KKKKNIDNIDNIENIENAKNVENNMNVENAKNVQNNKNVENAKNVQNNKNDKDFINTSCRYNNKFGMLVYKFPIDVKKYK 880
WD40-rpts
Query 881 LTFYKNNLAHLFTLIKIVIPNIYYIYEETLYYDIKYLCILICLSVFISLYKISLTCYERVEFLNCLKYIFSYNKEMYSFL 960
WD40-rpts
Query 961 RSVILNHLSETSVISGITICKIVAHFTLLILKNPDSSILDVNNVENEVSNILKCINKNEDVNGGLLFNITHLMRDYNNRY 1040
WD40-rpts
Query 1041 LYVLLHIVHKILLKKKEEILEWEDKKESSSICFNKKIYNIIFMYFYDIFNNKMYIKKNDDKGCNNSTKDLLFFNRDREIM 1120
WD40-rpts
Query 1121 NVFLEYSELFFNYEKEKKITRQGGNICSYFKNENIKEELGFDEIVVIKNFIHSEEKCYNNMILCYYYLIYLFSNLSEKKE 1200
WD40-rpts
Query 1201 DSCIYFYQYNIGKRLYFFLYQSLLYGNNMKEYNMNVSKYYTQDMIIKEKNKMDVLELLKSIDRNIRLYIFLYALLFVNNK 1280
WD40-rpts
Query 1281 RKEDMVHGLFLNSIKRIYKIFSENMLGEKNIEDINSNDIMHIKSLVVKIFDSYHYYLIINNLSFKSCYELIKIIKECLNI 1360
WD40-rpts
Query 1361 YDHFPIYFFKDNFSNKNNTKRVCPNKYYDYINVNDPKGKGDGECDGEGEGEDDDEDDDDNNNNNKDDGNGKKKKKERERE 1440
WD40-rpts
Query 1441 KKKNELFYEWKKEYDEFPSLRQDFSYNVYSRNRKSSELSKNSKPKKKKDNKNVSCGSSPNMDSINNNEIIKNTNENKNNC 1520
WD40-rpts
Query 1521 DYNIKEDDESGSSNKSINNKAKGNDDTMNKIDTTNNNKKINKTKDDEHEHEHEHEHKHEHEHKHEHKHKHKHSYVDQETL 1600
WD40-rpts
Query 1601 EKMEILKRIEKDYEENNKKKNGKNEVNLISDHEKKGDDEGDINNSEKVVNIEHTLDKDVEIIKEILPNKKKNIKENKDKE 1680
WD40-rpts
Query 1681 GEDQEDTNKINVEDEEKKKKNMTTNNTCNKINKDKKKMCPIRYYDNNRGEYNLYNYFNNNRYINYIPKDFFYENLFNESI 1760
WD40-rpts
Query 1761 NNNLTIDKSNKNKSMYNNYNCHFPIHLRRNGLYVDNVSIFGMLNKGINISLCEQDDIKNILLDEYKHNVLNKNEDKKQNN 1840
WD40-rpts
Query 1841 FNDYFEDVLMLPRHKNKKSVAHDDSLISKDRKSFMTTNMSVSEKGACTTNNNKNNNDNNNDNNDNNDNNNDNMYVKIPKY 1920
WD40-rpts
Query 1921 FFKNIIDKEKRKIHGSFNIFETFNKVENLVRKNMNKCIGKGLYPNKYYSKDDDDLIILSVNGVDVHNNSCLSEYLMKLNE 2000
WD40-rpts
Query 2001 DMYYMNNNSLCVNDENIFCNIENFYIYNDVVENIPPQFFGLKNNIKYLWNNNYNINNNNNMNNVNSVNSVGALICGGNSY 2080
WD40-rpts (____
Query 2081 NTRGSHDITYKIIKKRKNNDRISKPLYDVERMLNMNENNNIYSLNKNNNIYSLNKNNNSVNYKGCESSSSRNNSLFMNLK 2160
WD40-rpts _______________________WD 1__________________________)
Query 2161 KKKESNDLLHTDDSKKYYVMKPRGDEQQSVLQPEQEESVSNYVDWVTYKKIKTSINTPLCCKMVNEKYNYYNISYDLFKH 2240
WD40-rpts
Query 2241 LYDNNRNCVNKNNMNKEHGVLGNGMNESFENNNLIKHEVNTKEDSTSSFNMSKGEITSFDNNINNSDLNNNDNKMNNFDY 2320
WD40-rpts
Query 2321 IGEGKNMVILSDGTNLSTLGKSYFLRNHLINKYKENELNFLFSQRPYVEDDCMYLSNYLQIEMMKATELIFMDEHYINKD 2400
WD40-rpts
Query 2401 IMLSTHIHNINFLVQKVGDNENIYSEDNKNFMKHFNALELLRRKEKILFDKYRNDNYDLFKKNKECVHLNVENIYKNYDE 2480
WD40-rpts
Query 2481 NNEEDFYLLYNYMPIYNEMIKSNVMMYEEGEVILKSIDNTKTFLGDNLNYHNNNKELYNGDNIYVKNELNLNNIESYYNK 2560
WD40-rpts
Query 2561 RSCDKNNEEKNIFLDNMFNFLIYKFLYLLCKHFKMCDVGTFMNFYNNNGEEYFKYNEYVIEARENSLLFEETKREIYKFK 2640
WD40-rpts
Query 2641 YLFEKSVNDHSNNYDNNNKNNNNNNNNNNKNNNNSISSSEYLNEFNFIENEKNIDIHDIKKKDFLLNSINNKVIYYLNNP 2720
WD40-rpts
Query 2721 LFIFSEKLPSWVYKIFYLFNFVIDIDIRLLFFELIYFGNYRGLYNYKQKIKELVEKFNEKVNFDNSMLSEEHLLSVCANY 2800
WD40-rpts
Query 2801 TYNSDKKKLFNFLSDNNILSLPRTKIKLHRNKIIESSLRIFNHLHYIHSNYITPSFLDIEFFNEEGIGLGPSLEFYNEVI 2880
WD40-rpts
Query 2881 EELKKEKLKLFKIEDNYLFPISYKINLNNFDFSLLKKPKSSEIVGSNNKSLHNNMYPSSPYHQPTSLNKRINILNDGTSN 2960
WD40-rpts
Query 2961 HTNSYSSVNNLINHFLFSMNSNIFQRESHSKSNGKSKVENNNKVKGEVKNRKSAKKCKSEKKHGDDYLGDDQQGKEDVHD 3040
WD40-rpts
Query 3041 DDKYKYDDNYDHEEDDYEDDYEDDYEDDYEDDYEDDYEDDYEDDYEDDYEDDYEDDYDDDYEDAYDEQKGHIDYDKEYDD 3120
WD40-rpts
Query 3121 EDEDKKDSDMLNSEFFGNRLRNRKNKKNLKYVTENVNKNNKNKKSKKNKKNDSCVVDSKQKSITSTDKRKNKKNKKNDEK 3200
WD40-rpts
Query 3201 MDNAEEHGKKEDILAKGSSRRSSSKKKGSLKINNKEDDEKSALDENQEDIKLQTLDKESDKAKENLEEEQIQCEKNKKKR 3280
WD40-rpts
Query 3281 TRSYNNTDQKEKKQVENVPDDKMYEEAHGGVSNDDEEGIQKGKLKKSTIKKNINSDKGEDSEKNVSKLNETKEKEVVIIS 3360
WD40-rpts
Query 3361 SNKKLIENVSVNTTDMLNKKKNGSTSQVVKEEYMEKSEKQCCKLLDKTFEDEKKKIIIINDNNNNKEHENFDKNTVTIEN 3440
WD40-rpts
Query 3441 KNNKSIITKEENGLEEKSKSSNKDDEMQQCVTEQNENYILDEDKNINVPIKKYKLFTKDFEEHFMKEDKNIDMNKNEKEE 3520
WD40-rpts
Query 3521 QIKKNVNNNSPINLSESVTQNIINSLLKEIENNKMPVQEINDKIQNANNKKLDNQNVNNETTQNIRSNVISNKTKKTSSD 3600
WD40-rpts
Query 3601 KIKKKTIHIDQDTLENRLFKYFKLLGQLCAKILTDNRNINVNLHPLFWYLVMSNSSYINLSKFHHYHAIDRINMNSINKL 3680
WD40-rpts
Query 3681 LEYRNENKNVEDLHLDFTLLGSNPPVELIPNGSNIPVTNENLNLFINKTIEYSLYDGIKFQIWAFRYGFSTIAPLVCTNM 3760
WD40-rpts
Query 3761 FDENEICEFLFGSNIENDEHWTKTHLSTYIKPDHGYTNDSITFITLIEILSEFNKEERKQFVKFCTGTSALPNNGFAALK 3840
WD40-rpts
Query 3841 PLMKVVKKEDNNDLPSVMTCTNYLKIPDYKNKEKLRNRLIYAINEGQKNFSLS 3893
WD40-rpts
 1 WD40-repeats found in QUERY=EG_MAL7P1.19 (Len=3893): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 32 2076-2134 2.92 235.11 0.04144 15.0% 1.70Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2076-2134 GGNSYNTRGSHDITYKIIKKRKNNDRISKPLYDVERMLNMNENNNIYSLNKNNNIYSLN WD40 Template TGECLRTLSGHTSG-----------VTSVSF--------SPDGKRLVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |