WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_MAL8P1.139 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_MAL8P1.139 (Len=5910) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_MAL8P1.139, Len=5910): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDRSCKECNVRISRDSAHDEYDNKDLVHIYRKPMINKSVFLKRSEKKYHPINKHVINSYNIFPYGGIYYHDIIIKDVLKF 80
WD40-rpts
Query 81 FYKNNDKRNSYSNYLLHPERESSNYVYLGAGIMREEQNKKNKEKNKMVFIFFINEILLKRLRRNNLRKRRIRRVGKGEQN 160
WD40-rpts
Query 161 ENINIINSNNNNNNNINCSNNDQMYCPSRQGDIKEEDGNKETKKNIINNKCNNNNNNNNNNNNDESCFVRNVEENVKEVN 240
WD40-rpts
Query 241 KKNVLLSSSSSLNRNKNYVKEYKKKRSNIKRLQDIDNILNEQSNNKHTFIRTKSSLFYEDIKTKEGGTCTDVNRNKKNTS 320
WD40-rpts
Query 321 MNSFFSDWKNIEENNTNIINDIINEEIYVNKSTTLDSLYNKESSNDRERLCDKRSGGKKRDHYEYEYYDDYGDDYVDDYG 400
WD40-rpts
Query 401 DDCSDDYGDDYGDDYGDDYGDDYGDDYGDDYSDDYIDDYIDDYSDDYSDDYINDYGDDYIDNHCNNHCKHLEELHGQPNK 480
WD40-rpts
Query 481 VYKKGTYGPSEKQNVYTDKNNIFLLNILHHQNNVYSVKWKESSYEEFSILVSICYDGYMYIWKEHMNCNNKFTFISICRI 560
WD40-rpts (_______________WD 1_______________)
Query 561 YILYFENLIQNIKWYWIKKNEENEENYNFLFNNKNINLSKNEYLIVYGSKNDLLDNKDNYYNNFICTQKNKMKNCIYYNE 640
WD40-rpts
Query 641 FKSNHNNDDHNGDHNNDLNNDHNNDHNNNLYYSDIKDFMVFSIYGIFNIYDNNIHIKNILNHENIPLHINFNHILDAKLE 720
WD40-rpts
Query 721 YNLMNTSLISVYTDDTYSPVNEYNIKYGKWKIKKIIDHSIIINNSKSPQHLNYINTQNNNIINHQCYDKTFSPLSYYIQN 800
WD40-rpts
Query 801 NKHLNNKQNDFILFEKLFNTINNLMPPFSIKISTYNKDFYKIFIKPSDIWIKKKKSISIRYFVDYKNLLLQPSQKKNYKH 880
WD40-rpts
Query 881 HKQNNYHHYHHYHHYHRYHNFNNIKKNNNMFKYKHMQYDLQFNIYHNILVILNKINNKMYLYDVVGSLKKKNINNNNKKN 960
WD40-rpts
Query 961 KKKKKNYYSFNQDTNIHTQPLENSNTYENNMNKNNIYEYHMNSDINSNHVNANHLLNKNVTQNIQSTQLSSNINTNYVPH 1040
WD40-rpts
Query 1041 RNNNLQMYEQNNLNNQTIYNTQRNNNFVLSSNQLDYINEHNNNDACGDTSLYKTNSCGKHNIKCNKRLQKNTQFYSLICC 1120
WD40-rpts
Query 1121 LNSIYIDNYYILKYKGYDFLNNKTHFIYSYVYKFSTFYDNVKKNKNLYVSTSEILEKKHLIPLVYKCKMIESFDSFFLLL 1200
WD40-rpts
Query 1201 CIDKNKEHVFALKSEKMNIVNNIKMICIFDDYSSYIQPFNVNKKNDTLYNKNVNTKIKLDNNIYINKVKSDILLIEGHKE 1280
WD40-rpts
Query 1281 INIIDYVIDDFYIYNKNIEHNLLLIIKYVYTVHKNNNLHNKKKKKEIYLLTISTIDICKDSFIYLNLKLKNMFTFFNPIK 1360
WD40-rpts
Query 1361 NNKFLFSYYTLSFQNIILFVTNHNLILKDKGNYNFNEECAYDDSDEDDEYEDGHGEYKERHGEYKERHGEYKERHGEYKE 1440
WD40-rpts
Query 1441 RHGEYKESHGEYKERHGEYKERHGEYKDRHGEYKDDKTQNCTSNYMSIYNIANNYNDNKDYSREKVFEKNDHSFFFKRQK 1520
WD40-rpts
Query 1521 IYSKKDSMSNEECVVFINNSDDEKYEDTNNMHNVNKIKTNNSKNVTINNNNINSNSNKFSNFISRAFNTSHTFSDKHNSN 1600
WD40-rpts
Query 1601 SKESNKNKQTNSGCTTRKNKNAVNLYFLCTKKGSVVHFMQIQNILKLVNILLYNSYILFITNKNIHILNLNNLYNNLIYQ 1680
WD40-rpts
Query 1681 EKVNHFKLNKSYSNVNELTHTINQENVLSKSEKQSNWLVTFSFPDLLRGKTTQIYMTSAGKKNVHFIVISFMLMDQGVYD 1760
WD40-rpts
Query 1761 MSDKMNRNELYGNEEIVRKYNKNYGNDFCYKSVVLYNNACDDEEWNILKYENNNIFIYSKNSLFLYGNKLLILKDVRRRE 1840
WD40-rpts
Query 1841 DQCVCVGNYNDDNMGEKQSSEIDNKSKHYLASRKEKRIEEYYLKKTENISLNNKIKFYEINLLKKFKKHILNLYKLDVLN 1920
WD40-rpts
Query 1921 GDDYKEEGILKEKGKNKETVIKSVNNMNKIYSVNNFHYNNTKLVFYHPILLLNYIKMGLFSHVHLSLKLLLHILLNIFYK 2000
WD40-rpts
Query 2001 EKTTYNIKKNCALRFVMENKKLEMTHYNYQDICCSVQKSQFLYDLNFIHGEIYNLYKNKKESLYSSNNLPRDDKNYLTKE 2080
WD40-rpts
Query 2081 KLEQKDQEKENKDKSIYLFENESISLDDFNLNSDSDDDNNDNNKEEAEKKNNKMNNNNNNNNNNNKNKDYDDDDDDDNSL 2160
WD40-rpts
Query 2161 LSDDEDKPSELSNPDNNYNNDEKKLKEYLKYSNVINYELSIEEIKMLQILLLHINVPRLNNFFQLILYCMLNAFYYNMDY 2240
WD40-rpts
Query 2241 VCEEAQKYINKENKENSDDDNYNNEIYSDNDHHHNDDNQNDDEEKKGYKICHCEHFNFNLQKEKITYENIHIYEYINNIN 2320
WD40-rpts
Query 2321 NNDLVNNINYEDKNLLCINLNKNNLSSCLLFFFRFYINCLMLLNINIDIDYEYVHLFHFISIEDVGKEIYKYAENILTHY 2400
WD40-rpts
Query 2401 THYFDISVNEDDLFSINLFNKKTYCDNIKNDHIKYDNIKYDNIKRDDIKKDNIKWDNKVKIIPLIKKKKHNINSFCATSP 2480
WD40-rpts
Query 2481 LNNKKDNTYDTLDELSNKKENNNNNSNYYDFEGYIKNNKIIELNNIFLEKIHKSDIILEYVLKYNLFIFFKRLQLFYFMN 2560
WD40-rpts
Query 2561 TKKDLLFIYDILLNRTIKKINTINIEDKEKQNELNECMDFLALLYIAKNEKSKLMLFYKIKKQNKIYDFLSNNFKTERWL 2640
WD40-rpts
Query 2641 KALMNNAYKLMQIKRYYLATAFFILSGDIKDAIDVIHQYLQDAQLSIFLIRLINISYNVSTHENKKNDNINGDKINGDKI 2720
WD40-rpts
Query 2721 SGDKINGDKISGDKINGDKINGDKINGDKINGDKINGDKINGDNINGDQINGDKINSNNFMETSSTPQGFISNNISPISS 2800
WD40-rpts
Query 2801 NLAVFSNSPINSNSVHEKKNDDEQNDTTHIQNKKECLSSSLITHSVSYINKDSVDVLNIHMKREETNMLSTINRDLGNDM 2880
WD40-rpts
Query 2881 VKDKKESTYDERGETPELVQTNENFIYKYLNYILNEKIKDDVDNNHMSDTNLLNNKEKYNYIYKRGDSNKNMSFYILKHI 2960
WD40-rpts
Query 2961 MLGDLEKVYYTCEKKKVTNFFYLLLKNVIKEILISNNIIKIPIQNNNNNNNHDNNNIGYLVGGGGKNFIDEEVNIVKCNE 3040
WD40-rpts
Query 3041 KYKDVHNINMNNVKIYKSELYLYSINLFDAGLYNLSFVFYFLFFYYIKAYNLNKIYDRYKYFFMLYSEMYLEKYLFSIPF 3120
WD40-rpts
Query 3121 LFSSIFTFPHILKYSKRVDVKEGIDQIKKNNSNNNNNNNNNMMMMVMTDKNKYDTYKYNTPFFKTYDLLNKDNIIIINNN 3200
WD40-rpts
Query 3201 EERGERIDFVYSLNVFSRIINGLFILIRNNDDTNNMVNKVTYNNNNNNNNNYYYNSIYDHLMDILFIKRNEGHDDNYKNY 3280
WD40-rpts
Query 3281 INEEYKNNSDLLDIHEFNKYNKNQEIIINWKKEINCIFNLLNKLTYLKIRDISENKINLNYFLINLLSKIWGISRHKKKM 3360
WD40-rpts
Query 3361 FLSKKNKNMNTKKRNINENNIIHHEEDINVIRNVNNKDNVCIRTNKINNKFHHQNGIYDDNNNNNNIMISFQPLFDVILC 3440
WD40-rpts
Query 3441 DNNNNNNKKKKKKIKIYYYYTALNKYKIILTHLFFYFFHLYMKNYNEEYIMFLLINYIISIQFLYITDVVNILLNFFQQK 3520
WD40-rpts
Query 3521 KKKKKSLVALHIAFLQIILFRLTMSNFFVYYNEKRKKETCMDMIQYFDKKKIINNSNTYKNNNINTINNDNNYYYVGNIN 3600
WD40-rpts
Query 3601 DEQGKLSILLCYKSWKKGKKTKKKIIKKKNYKKRNNNDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSTCNNDSH 3680
WD40-rpts
Query 3681 FYMSNNPCDGKNTNFDEDKKQIKLKHKTSISTKKKLIKNSINNICAQISIKSCEYLQKKKRPSDYMFEKFCIINIFLSVF 3760
WD40-rpts
Query 3761 EFLIGNFHIFAYKSNVFIPNTMNIKKGDLRKEKVHNKSSVQNNNKYKTNIVLDDVHTNMLIDDIHTNILKDKLQINHINN 3840
WD40-rpts
Query 3841 QNTHFFYYHIYTLLLCIDNLSIHMNNFIYCKMKMLLYNSAYNIKNTLLTFLSFPFFFSKLKVKPNYIKCEHFIDSHISSF 3920
WD40-rpts
Query 3921 FHKHLYLIWKLQNCTYRSFLLFFNEEFYNFNDYINDKLLSYRNLINKININQRNDNFCKHSHEDEHNIYDKKKNGNNNHN 4000
WD40-rpts
Query 4001 NNDHNDHNDHNDHNKKKYDNNYDNKNIIDPSYNYNNNNENHSLQSNKISDNMKDPGNTYDNKNRKYKDDRNHVKEKDKRK 4080
WD40-rpts
Query 4081 KKKEKEKNIIKEESPLFNNTVMNNNSGNNNYNNIHHCDNTSDAYINSYKNEYKKFYDLYNRGFKLTEKDYILIPNVCIEK 4160
WD40-rpts
Query 4161 TNIACNHSNFLFKKSKSYEKFASFTSKINFLKKFKKNYVKANFIKCKEKKKKKKKKKNVPQNNYKNHQEQNYNSYYSIDY 4240
WD40-rpts
Query 4241 DNLFKMSSYTSSVLSNPNSDDEYIENDDHYHDHNVKVERTDIYNYDGYYNNIYKGNNNNNNNDDDHNNDNYNDNYNDNIF 4320
WD40-rpts
Query 4321 HCYEKKKKNNRHTSIFRQNNKKLPHVIPLSLLFYNFNEKYFMEKNKVDQSNSTILYIHKKNKIKKICILDHLKKLNKKCK 4400
WD40-rpts
Query 4401 FINYISYNDIEYDNKYISKKKKKKIILNEGYNNEINKKSKNHSSMINTSNKTIVSSDIHNTSNILPQFIFQNRESQADAH 4480
WD40-rpts
Query 4481 IEPKNENIQNGKPHILQLQKRSLGSDSIYDENGNINEQNFNVSNTIEEEGEGEGEEEEEGEGNNQNRNDHNNDARLNHEQ 4560
WD40-rpts
Query 4561 NDLVKEEKENMNKIMIHNNNKNNHNKKNQKVFLDINMNKLLYIYKCMHIQCMHNLTPLCSFLNTFVPNDYSITNFFHNTY 4640
WD40-rpts
Query 4641 NNYFVNNIFFHNFFYTYDNSLTLLLNSNNMNSLHYHNDIISHVDYGNEHDVYKNNSYAPGGFKSAGADENLRKKSSKGRN 4720
WD40-rpts
Query 4721 KNKINNHMDDNYNNGANIYNNGDNIYNNGDNIYNNGDNIYNNFDLSSGYEKKEHFNNLHTDKEKYEIEKSKNIKSVGINN 4800
WD40-rpts
Query 4801 KYNNNMNAYDEIKNNLIISKTAEKYMEMLLLLLYNNMRLYDKDKINDTNNTKKNEFRYFFEYIDKNINSCIRKKYNFINQ 4880
WD40-rpts
Query 4881 LSDEQRNISFFKTGGIISHPFLPFFALIHINNNEKNMNEQIIDKEKFQIKFCRFTDNYDDISYKYGSITSMTWNDSGNLL 4960
WD40-rpts
Query 4961 MVSDDEGYLYIYNIFLGNFIWTKTKERALYKKNLTSSSKNASKETKNKDIPNVTNDNTCSVKCVSDYRQEEKERGQHYKG 5040
WD40-rpts
Query 5041 RKDDQETYEEEYDEESEQDDYYDDDYYDDDYYDDDYYDDDYYDDNSYNDNSYDDNSYDDNSYDDEKKMNKKSLPYNKTQK 5120
WD40-rpts
Query 5121 RYQRKDKNNKLRNFFKENILKKKKKYMMEKETKDMIYMKNMRKLHIMRIKRRRKKLNKKKGYIIKEAMCVIKLHDQIIDI 5200
WD40-rpts
Query 5201 KYLNDNNFYIISIGKGVNKKCLNNNTVFINSYFMKSQENHMNKEKTETPRNCNIYKENMMNMKSFMDDNKYSNNMMSSPY 5280
WD40-rpts
Query 5281 IQYVNNLTISNNNNNNNDSNNNTVYDKKKQKDDQEENELQKINDTNTNIYEVQDKTQNTHHIIPTNLNNNNNNNKENITI 5360
WD40-rpts
Query 5361 QNDEKIHQVKTSHVHNNSTNVIQGINEKNAILDNFNITKKKNKMYTTKNNDTSNNNNNNNYYNNNNHVDTFLNQHVLKSK 5440
WD40-rpts
Query 5441 KSYFKSRFFYFDSSNIIPMKFFKKNKKLQEQNDILDNICICIWDMCSILTNEEKQYLKNKNVEMNTNENVNNKTESKKMK 5520
WD40-rpts
Query 5521 KKKSVILHPSLVCVISNLSKYYINNENIKNMNSYNNNNNNNINLYNNNNNNNNNNCITSFSVWTSTFTNYMYKSVCPFEK 5600
WD40-rpts
Query 5601 QNSMPLNEVGKNSTELSEPPKKKSIFWSLFKNKIHSDHFSQDAYIFYGDQLGYIHLIHLQLHREIYCFKPFDFPIFKIFI 5680
WD40-rpts
Query 5681 TTNMCTKLLILAEDRLKIYEILPGLQVVFIKEIEIKHDVSPKKCICEEKIHELKERRKKEEHENEGISIFNLSYFLSSNY 5760
WD40-rpts
Query 5761 HKKQSNTRSDEKMNSSYNYSYNRMPSDNNKSNNLLNGSAQNVNTNDSKKTVQLYSFQKNDKKKEKNTNSSFNSISHLKSP 5840
WD40-rpts
Query 5841 SENSEEMDIHSDKEGYQSVIIGGINFGYLGFNFSKFMNNKKKITIIDAYLLSTTHLVTISNNGTIALIKI 5910
WD40-rpts
 1 WD40-repeats found in QUERY=EG_MAL8P1.139 (Len=5910): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 508-543 3.19 246.30 0.02945 25.0% 36.92Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 508-543 LHHQNNVYSVKWKESSYEEFSILVSICYDGYMYIWK WD40 Template SGHTSGVTSVSF----SPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |