Input parameters:

  Query = EG_PF07_0017 (Len=1010)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF07_0017, Len=1010):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLEKFDIHINRVEYKNEKIYYVILVEYNELKYEINKRYSEFEELNCELLHLGFSALPNLPKKKLMSYKNNEYISYRKRI 80  
WD40-rpts                                                                                      

Query       81 LNSYIQNLFIRPDIRCCAIFLNFLLFYDKINLSIDIVKTKLINNIGTQKFSLSDLYINQKYNFLICVYEDKSNLSKLGKL 160 
WD40-rpts                                               (_________________________WD 1_________

Query      161 WSIIEPDMIGEIKVFSYNNDLTSNFVETYKEQTIYKARNIICSEKNKQAIISGDDGKIHIYKINIESFTLTYIKNITYHH 240 
WD40-rpts      _______________) (____________________WD 2___________________) (________________

Query      241 DTILKMMQFNDDLFCTCGYDNAFRLINLNDKYKILSGGRCNKRLDKDKITTCHLLAYNNIIIGTDSSLFFVYNMSTNPPI 320 
WD40-rpts      ___WD 3___________________)(____________________WD 4____________________)       

Query      321 YIDTKKIKNGIKINCFTNTDKYLFVGYDNVIACYNYHYLNETKSYKNVQNMDKIKNMHTNMKAKSYVDTYNINDNKFKVT 400 
WD40-rpts                                                                             (________

Query      401 TPHIDNTNSEHSFYGNPSSGTYSSYNHLENGNNYDMYKDNYITEDTQMYKHQKKDQHDKKIFYNIHNNNNNNNPSCNDDE 480 
WD40-rpts      _______WD 5______________)               (________________WD 6_______________)  

Query      481 QKIVITKVIVDNNISALYIPPLLYDNNVLSLCVNKEKKILYAGYEDAIILWSITNGIIISSFHGHTNGVHFLKYLNKSEF 560 
WD40-rpts                 (__________________WD 7_________________)   (_________________WD 8___

Query      561 LLSGGNGGNVKIWKNDIEHLKIWKPKKNYKFKDNNKHSNSGLNKNEFYYNNNINTENNFNFNDSDNTDKDAINSDHSDAI 640 
WD40-rpts      _____________)          (_______________WD 9_______________)                    

Query      641 SIDNLIEETNKKHEYDVYDTSSYKKNILNYKQSQKIDSYNDVKTNIFYDHKSENNYIIKDYKTDVTNLDVCVLNNNMPNN 720 
WD40-rpts                                                                                      

Query      721 EKENKFSYYEEGVQFDDKRAYPYYESSGSLEMNKGKIIYDNMGKDNIRHDHTKQNSMIYNNDSQDNIPYDNTKQKKSIIY 800 
WD40-rpts                                                                                      

Query      801 NNDSQENIPYDNTKQKKSIIYNNASQDNIPYDNTKQNSMIYNNAIQDNIPYDNTKQNSMIYNSASQDNIPYNNSSSENII 880 
WD40-rpts                                                                                      

Query      881 YENVPNSNVCNEKTSYYYDNTQSAKYTHGTYSHKNSLSSIYENYSYESNMDKYSSYPKVPTENNIYMKKDTHDINYSYTT 960 
WD40-rpts                                                                                      

Query      961 TDDVPYNNYKLDNMHNVNINNMKHIHNNDVKNNIVYVSDEEDEDLISAFR 1010
WD40-rpts                                                        

9 WD40-repeats found in QUERY=EG_PF07_0017 (Len=1010):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   122-176      4.28  291.49  0.00732       15.0%     35.33
  WD 2:  Seg  8   178-222      4.68  308.09  0.00438       12.5%     37.28
  WD 3:  Seg 11   224-267      4.59  304.30  0.00493       12.5%     47.03
  WD 4:  Seg 15   268-313      3.87  274.51  0.01237       12.5%     46.20
  WD 5:  Seg 24   392-426      3.51  259.80  0.01947        5.0%     18.78
  WD 6:  Seg 27   442-478      2.97  237.41  0.03863        5.0%     -4.14
  WD 7:  Seg 29   492-532      4.93  318.12  0.00321       17.5%     38.76
  WD 8:  Seg 32   536-574      9.56  509.63  8.4e-06       30.0%     44.75
  WD 9:  Seg 37   585-620      3.71  267.96  0.01514        2.5%      7.42

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  122-176    ---------INNI-----G--T------QKFSLSDLYINQKYNFLICVYEDKSNLSKLGKLWSIIEPDMIGEIKVFS
   WD 2  178-222    NND-----LTSNFVETYKE--Q------TIYKARNIICSEKNKQAIISGDDGK-------------------IHIYK
   WD 3  224-267    NIESFTLTYIKNI-----T--Y------HHDTILKMMQFNDDLFCTCGY-DNA-------------------FRLIN
   WD 4  268-313    LND-----KYKIL-----S--GGRCNKRLDKDKITTCHLLAYNNIIIGTDSSL-------------------FFVYN
   WD 5  392-426    IND-----NKFKV-----T-------------TPHIDNTNSEHSFYGNPSSGT-------------------YSSYN
   WD 6  442-478    ITE--------DT-----Q--M------YKHQKKDQHDKKIFYNIHNNNNNNN-------------------PSCND
   WD 7  492-532    NNI-----SALYI-----PPLL------YDNNVLSLCVNKEKKILYAGY-EDA-------------------IILWS
   WD 8  536-574    -GI-----IISSF-----H--G------HTNGVHFLKYLNKSEFLLSGGNGGN-------------------VKIWK
   WD 9  585-620    --P-----KKNYK-----F--K------DNNKHSNSGLNKNE--FYYNNNINT-------------------ENNFN

   WD40 Template    TGE-----CLRTL-----S--G------HTSGVTSVSFSPDGKRLVSGSEDGT-------------------IKVWD