Input parameters:
Query = EG_PF07_0029 (Len=745)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (EG_PF07_0029, Len=745):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSTETFAFNADIRQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESITDTQKLSAEPEFFIRIIPDKTNNTLTIEDS 80
WD40-rpts
Query 81 GIGMTKNDLINNLGTIARSGTKAFMEAIQASGDISMIGQFGVGFYSAYLVADHVVVISKNNDDEQYVWESAAGGSFTVTK 160
WD40-rpts (_________________WD 1_________________)
Query 161 DETNEKLGRGTKIILHLKEDQLEYLEEKRIKDLVKKHSEFISFPIKLYCERQNEKEITASEEEEGEGEGEREGEEEEEKK 240
WD40-rpts
Query 241 KKTGEDKNADESKEENEDEEKKEDNEEDDNKTDHPKVEDVTEELENAEKKKKEKRKKKIHTVEHEWEELNKQKPLWMRKP 320
WD40-rpts
Query 321 EEVTNEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKALLFIPKRAPFDMFENRKKRNNIKLYVRRVFIMDDCEEIIPEW 400
WD40-rpts
Query 401 LNFVKGVVDSEDLPLNISRESLQQNKILKVIKKNLIKKCLDMFSELAENKENYKKFYEQFSKNLKLGIHEDNANRTKITE 480
WD40-rpts
Query 481 LLRFQTSKSGDEMIGLKEYVDRMKENQKDIYYITGESINAVSNSPFLEALTKKGFEVIYMVDPIDEYAVQQLKDFDGKKL 560
WD40-rpts
Query 561 KCCTKEGLDIDDSEEAKKDFETLKAEYEGLCKVIKDVLHEKVEKVVVGQRITDSPCVLVTSEFGWSANMERIMKAQALRD 640
WD40-rpts
Query 641 NSMTSYMLSKKIMEINARHPIISALKQKADADKSDKTVKDLIWLLFDTSLLTSGFALEEPTTFSKRIHRMIKLGLSIDEE 720
WD40-rpts
Query 721 ENNDIDLPPLEETVDATDSKMEEVD 745
WD40-rpts
1 WD40-repeats found in QUERY=EG_PF07_0029 (Len=745):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 110-149 2.89 234.01 0.04285 17.5% 26.68
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 110-149 ASGDISMIGQFGVGFYSAYLVADHVVVISKNNDDEQYVWE
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD