WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF07_0053 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF07_0053 (Len=3569) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF07_0053, Len=3569): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MNILQKDKKNEKQSREHYLGKERRKDIFLLYNNRNKEYERRILKNNSTRKYKNAKFINTTNLNYHKYYYTYSINNMSEKK 80
WD40-rpts
Query 81 KKNCRMKKNDKEKENIILNKKRNMHEKYKLNVKKNNKNKKYNIKDRNMKEMYLTYDASHSDISDGVSLYNESNDNKFFKM 160
WD40-rpts
Query 161 NMDTSMDKNDLIIDDVTKNVLLNNNNDDNNNKNSLFLSNCEHEKDIMEYTTSGQYYDETNNINNKNTNIINNIDNKNKYD 240
WD40-rpts
Query 241 NSSSNNLDYCINKYDIIIEDPDMNCEMETMIEKDNILTNHTDENYIDLNKSFNKNIRSDINEINNLSTINRVEYLTYIQS 320
WD40-rpts
Query 321 TSSEKDNINNDTLYADNKEMLYIPKNNINVNNMINNYHTYIDNPKNNYLNLIENNTMSEHQLLYDDDIVNEDRIEGSYTN 400
WD40-rpts
Query 401 EISSTNNLPGDNQSNNNNKSNNNDNNNNNNNNNNNNNNNFYYYNNNSECSSLLNDNKDTFFHSNYTINNITNEVQDKSIY 480
WD40-rpts
Query 481 NNSNNMYENGLRNNLSNDINLTYTINSNSSNDENICDVNNKLYDSNYLTLNVNPLNYMENNLCDNKMYELTDYYNNSFVI 560
WD40-rpts
Query 561 NEKNKNNMNLYHHSSMNVNNLNITEDFKRDGDYNGSTTIYNTIENNNNNNNNNNNNNNNNNSNVDDGNNCHLGHNIHNIN 640
WD40-rpts
Query 641 NVYNINNIHNNNMNSINNNDRRSNSIASDEPKTNITNQKIGKNNIDKVKIISNNNSCTNYVNDVNTDCPNNNSNHDKKIP 720
WD40-rpts
Query 721 FKNDDYDTEMEEMQVKKREFKNMILNNKSEFTTINENDELYKTVLYFEKKNKKILKMRRSLKRKRKSPKNEHLENDSYAM 800
WD40-rpts
Query 801 QDDNNINEGQKNENHSNDILNNQVVNNSNDINDKNMIHLKVEQQEDADSNNNNNNNNNNLNVHNKYTDNDNNLLLVLLNQ 880
WD40-rpts
Query 881 KDNSNGNNMENNRNIENNAMLIIPKKKNNSTNVKGVKRNTKTRNQQSDTNDMCVNNDEICGDNGKTQKGVNRKVGPGRKK 960
WD40-rpts
Query 961 NVNFKMEENADTNVNYEKININNNNNSNDNNNNSIDNNNNSIDNNNNSIDNNNNSIDNNNNSINNNNNSIDNNNIIISSN 1040
WD40-rpts
Query 1041 NNNISNTMNGRKKIKKLKSVQTLNNKCNNNLDLSCINKINNNNQMDYTVTDYSSGNSAILIDKQNCETDYLENVQYNHTP 1120
WD40-rpts
Query 1121 NISLNGLTYNGVMVKCELSDGKMDNNNNNIITANCNIKEEPVENMTCVYENKKNNNNNSNNSNNINNINICNSSNSNNYS 1200
WD40-rpts
Query 1201 NNNSNHFTFMSNHNIEHNECVGKNNNQTIDHSEEPNNVKGKGKGIRRNLRGRKGKNKKDDDYFYEEEIHDENVAKKRNKS 1280
WD40-rpts
Query 1281 KNKNTLKRNKKCDDNNINSHMGIMITQNVQENNTGNITFNDNINKSNTNYRFSNNIQVKNENINNNILYNDISTICNNNN 1360
WD40-rpts
Query 1361 NNNINMNVINGNSENCITNENHDNHNTNKSISNDKDYLSNIKCDISLNTKTEQNDEVKSKRKTKKNPTKTNSSKVPKSKT 1440
WD40-rpts
Query 1441 ENNGEKKVRIKICLEDFFNKNKEIYNAIDIFSSVNDINLPSIEDENSIDLLLGNSKENETKSNNIQNLNDEKNEVHNLND 1520
WD40-rpts
Query 1521 EKNDVHNLNDEKNDVHNLNDEKNVQNLNGEKNEVQNLNETKYSNENVIEKLSDNTKIIKKNNTICSNCLYAYKIQICKRV 1600
WD40-rpts
Query 1601 EMFNFFGGKNDGLDKDALKEGKSNNTTNNNLDNNNNMERSNYQNNNYCYMNICEQMTNNNYIDIKLYKDLVKENKSLENY 1680
WD40-rpts
Query 1681 FKITFYCLCGYLQYIKDDSDWKQIINCYYDEKDELKPKAPHIFCIKCKEVLVTNRFLDKYKTKIIMICECGSRNYDRINS 1760
WD40-rpts
Query 1761 YWIRRGNIKQRKAPQILCELCNSKMWVHTWLDDIGSKVKLLCKCGFKNFLKKNNNWVRSPRWKKPVPLIICNSCQQKMYM 1840
WD40-rpts (_______________________WD 1__________
Query 1841 SQWLNNDGTKVKMKCECGWKTLIKEGNTWVRSEWSKKLLCLRLVKNPELLQKKYNIHSRRKGKANSNELCDDDDEEERDG 1920
WD40-rpts _____________)
Query 1921 EQVDDQDQHLQQIETNDIYKDNMIKNIQQQNNESYSFINSSINHNEKFNDELNNNNNNNNDNNNDNYIKHSLILNNVEDN 2000
WD40-rpts
Query 2001 VVKPAKKSTNKTRKNNKSLKNKEQDEKVNDMKNNNISSIDIKEQMTDPVMTKIDDKKNKRKKRTTKMNNTAINTNENNNN 2080
WD40-rpts
Query 2081 NNNNNIMSSIDNVNNTNNINNVYLNYENNQNNEADSNKAYLIPNNVTQSNDLILNQYNMINNLKENNKIIETNVPETVPI 2160
WD40-rpts
Query 2161 VKDKRRKQNKKVQKVINDNNNNNNNNSNNNNNNNNNNNVVGGKNNNDDIVPCSNTKPINKKCRKVTFNKKNEKKKKNEKI 2240
WD40-rpts
Query 2241 NEEIKNSEIVGTLITDSNITDSQLYKSGQSEEKNMLNGNGILLLEDNINNNVNESPEKVTNISINMNPSYDFYNNEDGST 2320
WD40-rpts
Query 2321 VIPEHNETNNENYNKIYYQNSYYIVSNYYDCYGKDYYNHGDISTYNENDLINNNDNIECTIITTTNNNTTTDNNNNNINI 2400
WD40-rpts
Query 2401 DDNIKNIDTIVNNSDNIINNNNDINNINSINSINSINNNNNDDANINNDNNNVEGETNANFYENYLPNNNFQIINNNYVM 2480
WD40-rpts
Query 2481 SYDMNVTDEYLDVNKKFSDKHEILIPLEGYDKKKYIIENIKKFNYNISEMEMNSILENLDDNTLIDTFIENVIDKDEIEK 2560
WD40-rpts
Query 2561 SKLDDNDVTGNYSNELYPNKIYVDTMYTYDNYPNDIYENEIYSNEMYKNVVYQNEYYHNILEKNGINNLDIDINMDMDMD 2640
WD40-rpts
Query 2641 MGVDMNMDIDINMDMNMDMNMDINMDINMDMNNVNMNNVNMNNVDMNNVDMNNVDMNNIDMNNIDMNNIDMNNIDMNNID 2720
WD40-rpts
Query 2721 MNNIDMNNIDMNNIDMNNIDMNKVDINNVDINNVDINNVDINHINRNINDTNVENISNNNMDIQISVNNVDNKNADMNLN 2800
WD40-rpts
Query 2801 HMEKKIIENDINNNIIINDNIINNNNNISSSEHMNTNYEMLEKMSAVENNSSLNKTLRDNNFMNSNILNFNIKNNTNNSN 2880
WD40-rpts
Query 2881 PFNISKDINILEKHNLERNNNILEETSSIKNMTNNVILNCNKNIIDKNIISNTFDNVTSENISTLQKNYYENEKNNLINN 2960
WD40-rpts
Query 2961 TINNVNNNINDDNKNKNMQNYVPEIDNGSSLINSPYFSNQYENVMTHMYVDKSVMQNENFNNMGNNKFSIINKMNNVIHD 3040
WD40-rpts
Query 3041 KQVYNNKSNDNNNNSNNINNNNNNINNNINNNSNNNNNNNNTNNNINNNINNNINNINSNNNTVVGEYNEKNYKDLSFVT 3120
WD40-rpts
Query 3121 NNNEHHHDGSVIPNNFCNNFSMYANMMNIQNVNGGTIKGHISTTFKTNLDHIDPNKNEMSVYNQVNEYDVINEYDEMNEY 3200
WD40-rpts
Query 3201 NEMNDYNELNELHEIFVRYNFNSDSEEKPCLHERTCKINEFITVCTICHDYINENMECKLVSCNNIESEENLGHKLNEED 3280
WD40-rpts
Query 3281 EELLVHNNNINNYEQILVEKEKIENIHFDENIYEAIPMENLKNNLDDSIPKNNNIVNTNNSNNVALNYSNNENIVNSSSI 3360
WD40-rpts
Query 3361 NNNNNDNNNNNNNGDHDCLITNNISILEGNEGDMNYIYNSYEEFYINNNTMDDMKNNNNYMNNLFYQEHNNYSTTADNFA 3440
WD40-rpts
Query 3441 SNQTPLIKHQKFYYAENSNNNYLSDSANYVNGQSFSNNDELFKNDSLYSDNNSPLISNNNNNNNSNNNNNNNNNNSSDNS 3520
WD40-rpts
Query 3521 NNNSNSSNNSISSNANPTNNDCNDNYQENYDNFIKSECNNNSCYNIVQI 3569
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PF07_0053 (Len=3569): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 44 1803-1854 3.77 270.33 0.01408 15.0% 21.27Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1803-1854 KCGFKNFLKKNNNWVRSPRWKKPVPLIICNSCQQKMYMSQWLNNDGTKVKMK WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSG------------SEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |