Input parameters:

  Query = EG_PF07_0092 (Len=602)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF07_0092, Len=602):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLYVEQKVEPEKIKEEKINVNVNKILYKAHKNIKKEKIKNPSKRIDYLCVDKNDLPKNLPNTKNIKNRKLKNQLNKDV 80  
WD40-rpts                                                                                      

Query       81 KLAILSSKKLLANTKFMPLKEGYIKYNSVNEPKVHIAPSKDEEDEKEKKKKKKKKKKKKNELIDSKEIETTNNDNNNMNN 160 
WD40-rpts                                                                                      

Query      161 INSCNRNDLDFNTYKNYIIEKEGINYLAPSDEEDNKNRRASQKYIYDNADVGTQKKVFDLKLNMGPYSCTYTRNGKYLLM 240 
WD40-rpts                                                     (___________________WD 1_________

Query      241 TGVKGHVSLIDTHNLESLCEFQVDEMIRCNTTLHNYKLFAVSQKKYMYIYDNTGMEINCIKDILYTYNMVFLPYHFLLTS 320 
WD40-rpts      __________)   (________________WD 2_______________)(_________________WD 3_______

Query      321 IGEFGELVYQDISVGNIVTRKKTKRGPCSIMKQNKKDAIIYLGHKNGHVTLWSPNIDKSICDIFCHHTPISSIGVHENYL 400 
WD40-rpts      __________)   (_________________WD 4________________)   (________________WD 5___

Query      401 ITASVDSTYKLWDIRKMEYIKSYKSHNIINNIDISDTSLVAFSMNTHFRTYKNLFTNPQLYITHNIYGDQINSISFQPFE 480 
WD40-rpts      ____________)                                            (_________________WD 6_

Query      481 DICSLGLKHSIKTLLVPGAGIANIDTFFNNPYETKKQVRENEVKLLLDKLPADTIKFNTDQIGNINPYLINHNEQKNDTN 560 
WD40-rpts      _______________)                                                                

Query      561 VYNKNNMKKKNKKNIKNKKNLKNNKNEENINRMHKQSEHETD 602 
WD40-rpts                                                

6 WD40-repeats found in QUERY=EG_PF07_0092 (Len=602):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   208-251      5.09  324.87  0.00260       17.5%     41.48
  WD 2:  Seg  7   255-291      2.99  238.18  0.03773       10.0%     47.61
  WD 3:  Seg 11   292-331      5.81  354.52  0.00104       17.5%     55.53
  WD 4:  Seg 15   335-373      6.86  398.01  0.00027       10.0%     55.97
  WD 5:  Seg 19   377-413      6.70  391.61  0.00033       22.5%     53.19
  WD 6:  Seg 27   458-496      5.53  343.23  0.00147       15.0%     51.57

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  208-251    NADVGTQKKVFDLKLNMGPYSCTYTRNGKYLLMTGVKGHVSLID
   WD 2  255-291    -LESLCEFQVDE----M-IRCNTTLHNYKLFAVSQ-KKYMYIYD
   WD 3  292-331    NTGMEINCIKDI----LYTYNMVFLPYHFLLTSIGEFGELVYQD
   WD 4  335-373    -GNIVTRKKTKR----GPCSIMKQNKKDAIIYLGHKNGHVTLWS
   WD 5  377-413    -DKSICDIFCHH----TPISSIGV--HENYLITASVDSTYKLWD
   WD 6  458-496    -PQLYITHNIYG----DQINSISFQPFEDICSLGLKHSIKTLLV

   WD40 Template    TGECLRTLSGHT----SGVTSVSFSPDGKRLVSGSEDGTIKVWD