Input parameters:

  Query = EG_PF08_0019 (Len=323)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF08_0019, Len=323):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMDNIKEAEISLRGVLEGGHSDWVTSVSTPTDPKLKTIVSASRDKKLIVWNINTDDDSGEIGTAKKSLTGHSQAINDVSI 80  
WD40-rpts                (__________________WD 1_________________)          (_________________W

Query       81 SSDGLFALSGSWDHSVRLWDLSLGETIRSFIGHTSDVFSVSFSPDNRQIVSASRDKTIKLWNTLAQCKYTITDQQHTDWI 160 
WD40-rpts      D 2________________)   (_________________WD 3________________)    (_____________

Query      161 TCVRFSPSPNQAIIVSCGWDKLVKVWNLKNCDLNKNLEGHTGVLNTVTISPDGSLCASGGKDGVAKLWDVKEGKHLYSLE 240 
WD40-rpts      _____WD 4_________________)   (_________________WD 5________________)   (_______

Query      241 TGSTINSLCFSPCDYWLCAATDRFIRIWNLESKLIISEIYPVKQSKIGVPWCTSLTWSANGQLLYCGSTDGNIYVYEVKK 320 
WD40-rpts      _________WD 6_______________)   (____________________WD 7___________________)   

Query      321 HSV 323 
WD40-rpts         

7 WD40-repeats found in QUERY=EG_PF08_0019 (Len=323):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-51       7.40  420.55  0.00013       37.5%     47.06
  WD 2:  Seg  5    62-100      9.97  526.33  5.0e-06       37.5%     54.27
  WD 3:  Seg  9   104-142     11.30  581.49  9.0e-07       57.5%     56.25
  WD 4:  Seg 13   147-187      8.31  458.08  4.2e-05       35.0%     56.32
  WD 5:  Seg 17   191-229     10.40  544.15  2.9e-06       40.0%     53.77
  WD 6:  Seg 21   233-269      6.49  382.72  0.00043       27.5%     53.34
  WD 7:  Seg 25   273-317      7.42  421.13  0.00013       27.5%     56.45

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-51     SLRGVLEGGHSDW------VTSVSTPTDP--KLKTIVSASRDKKLIVWN
   WD 2   62-100    GTAKKSLTGHSQA------INDVSIS--S--DGLFALSGSWDHSVRLWD
   WD 3  104-142    GETIRSFIGHTSD------VFSVSFS--P--DNRQIVSASRDKTIKLWN
   WD 4  147-187    CKYTITDQQHTDW------ITCVRFS--PSPNQAIIVSCGWDKLVKVWN
   WD 5  191-229    CDLNKNLEGHTGV------LNTVTIS--P--DGSLCASGGKDGVAKLWD
   WD 6  233-269    GKHLYSLETGST-------INSLCFS--P--CDYWLCAAT-DRFIRIWN
   WD 7  273-317    KLIISEIYPVKQSKIGVPWCTSLTWS--A--NGQLLYCGSTDGNIYVYE

   WD40 Template    GECLRTLSGHTSG------VTSVSFS--P--DGKRLVSGSEDGTIKVWD