Input parameters:

  Query = EG_PF08_0065 (Len=491)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF08_0065, Len=491):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNEELEVDENAYDMLFSPLTPWPCLSFDYILEHPKHDALSEEEKKRRKENIDSGILNYPLEVCCVAGTQANKRELNQIYV 80  
WD40-rpts                                                                                      

Query       81 IKWSNLNKLKNVDDEEGSSDNSEDNDSSDFDVDIDEENDDTINGNINNGIEKKEENNVNNKLNNNNNNNSKHKKNDKLKE 160 
WD40-rpts                                                                                      

Query      161 KLQKNEDTHTHKKSSVICKAIKHKYGSINRTKICKKINSLVATWCDDSNIYIYDISDEIKNLEVRPYNEQIEKKPLHVFE 240 
WD40-rpts                    (_________________WD 1_________________)                      (___

Query      241 KHTTEGFSLDWNPVHAAQLLTGDNNGNIYLWLPNNSGKWNYELLNLKNMYTTNDNNNNNNKYNQNKQQCSIEDIQWCKKG 320 
WD40-rpts      ____________WD 2_______________)                         (___________________WD 

Query      321 NGLGNVFAMCSCDKSISILDIRNKNANSTNKNIHIENAHTNDVNVIAWNENTEFLLASGGDDNIIKVWDIRNTNNAVAQL 400 
WD40-rpts      3__________________)         (_________________WD 4_________________)    (______

Query      401 IFHKQPISSISWNFKDTYVLLASSLDNSISIWDLSVETESLEFTDSKYPDQLLFEHLNQKFITDAKFHPHYPGLVVSTSS 480 
WD40-rpts      ___________WD 5_________________)                                               

Query      481 ENFNIFKPCNI 491 
WD40-rpts                 

5 WD40-repeats found in QUERY=EG_PF08_0065 (Len=491):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   175-214      3.93  277.08  0.01143        7.5%     55.62
  WD 2:  Seg  9   237-272      5.80  354.09  0.00105       22.5%     47.76
  WD 3:  Seg 12   298-340      4.63  305.90  0.00469       12.5%     45.00
  WD 4:  Seg 15   350-389      6.66  389.76  0.00035       30.0%     51.79
  WD 5:  Seg 18   394-433      6.56  385.50  0.00040       27.5%     48.85

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  175-214    SVICKAIKHKYGSINRTKICK-K----INS-LVATWCDDSNIYIYD
   WD 2  237-272    ----HVFEKHTTEGFSLDWNPVH----A-A-QLLTGDNNGNIYLWL
   WD 3  298-340    NNNKYNQNKQQCSIEDIQWCK-KGNGLG-N-VFAMCSCDKSISILD
   WD 4  350-389    NKNIHIENAHTNDVNVIAWNE-N----T-EFLLASGGDDNIIKVWD
   WD 5  394-433    NNAVAQLIFHKQPISSISWNFKD----T-Y-VLLASSLDNSISIWD

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-D----G-K-RLVSGSEDGTIKVWD