Input parameters:

  Query = EG_PF08_0130 (Len=1121)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF08_0130, Len=1121):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLNYTLSNICGCFYTGGKILFSNDGNSLFVPVSNRINIYDLSNNSCNTLKSESRNDIRHITIHPSMEIIITIDKFGYGCV 80  
WD40-rpts             (______________WD 1_____________)   (_________________WD 2_______________

Query       81 INLLKDQIISRILFKSKTGVVTSFNYNNMLTPQEEQDVVNSAMFTNSGKYFLITVGRRVVIWKSPCKQNNYKLIKYNDIC 160 
WD40-rpts      _)                       (________________WD 3________________)(________________

Query      161 FHSLNVISIDISTDDKYFLTTSYDMTIRIHTVKKEKKIKPTILGGNKTTIVGAFFSKNGNFIFSVNKSGLIIIWSYEAQT 240 
WD40-rpts      _____WD 4_____________________)(___________________WD 5___________________)     

Query      241 GVDEKCENFEAEKVYEDVSRDDNKGDEDVSMDDNKGDEDVSRDDNKSDEDVSRDDENISSDNEKKKNRKEEKWSKICAHD 320 
WD40-rpts                                                                                      

Query      321 NKIKDNTNKNKNNNHHNNNNNNNDYFNSSVKRAFEKRWRYKRIYYCNQEKNEEVIRSCFNKEKDIFVIAFSSGRFGIYST 400 
WD40-rpts      (_________________WD 6________________)     (_______________WD 7______________) 

Query      401 PDMISLYNISINTNTIDDITINTDGEWIALGEGNNGTIIIWEWKSESYILKQNTTNKNVKCVRFSPIISHLKIGSHIIDN 480 
WD40-rpts        (_________________WD 8_________________)                      (_______________

Query      481 SSTYHESDNFTSKFVIVTGNEDGTIKLYDYLSFINFVTFTAHTNTVTDICFLPQGNAFISCSLDGTVRAFDLLRYRNFKI 560 
WD40-rpts      _____WD 9___________________)   (_________________WD10________________)         

Query      561 YTPDVITDLNHYSNNMNDLNSSGKKKVDKKLNVQFLCVGVNISGNIVAAGGRGNEYVVYIWNVQTGKCIDKLFGHNSPII 640 
WD40-rpts                           (__________________WD11_________________)   (______________

Query      641 KICFSTNLKNEGVIASCSWSKNVLIWDLYARQNKGSKYEEITTSHDISYMCFDPRGNDILAVCTLSCKIMFWDISIQEVV 720 
WD40-rpts      ____WD12__________________)      (_________________WD13_________________)       

Query      721 GTIEGARDIKRGRLLGEQFGAIPKMNKKRNRKKSLNNVDEESMYEEDLEDQGNNTIVNQNCYFTSIDYIHNGNYIVGCAN 800 
WD40-rpts          (___________________WD14__________________)  (_________________WD15_________

Query      801 CSVSLYIYDTNLYLLIKIIDLTKNYCVDGIKREISTRYLTSEGTHIYELDISDEEGDIYLDNYKIMNRKKKQNLLPGQIN 880 
WD40-rpts      ________)                                                                       

Query      881 EDYLNSKLKKYKFLLNQLHISGDDRHIAVACNTGLYVFTKDYQYQYIPSIKNIYKGLISPNIYVPKFLTQNVNLNNLKNS 960 
WD40-rpts       (_________________WD16_________________)                                       

Query      961 LKKKEYMKAFILSLALNNYENILEVYENIPYNIIPLCVKVLTKPFLFILINFIKTLLINDTIKHIHLHLFYLNSLFTTHF 1040
WD40-rpts                                                                                      

Query     1041 NVFLNNDFYNHMNNNKSIKNSQDKIKTSTQNVMSNTSSLFSSDEIRTSLLLILKQIFTINNGLQYLYSNNINVLKYLSLK 1120
WD40-rpts                                                                                      

Query     1121 E 1121
WD40-rpts       

16 WD40-repeats found in QUERY=EG_PF08_0130 (Len=1121):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     8-40       4.06  282.51  0.00967       20.0%     29.59
  WD 2:  Seg  6    44-82       6.33  376.05  0.00053       12.5%     57.34
  WD 3:  Seg 12   106-143      5.27  332.33  0.00207       17.5%     41.43
  WD 4:  Seg 15   144-191      6.73  392.61  0.00032       25.0%     56.95
  WD 5:  Seg 19   192-235      7.25  414.21  0.00016       22.5%     53.04
  WD 6:  Seg 29   321-359      5.57  344.86  0.00140        7.5%     29.33
  WD 7:  Seg 31   365-399      5.26  331.91  0.00209       10.0%     50.68
  WD 8:  Seg 34   403-442      6.89  399.45  0.00026       25.0%     55.94
  WD 9:  Seg 40   465-509      6.56  385.49  0.00040       27.5%     35.37
  WD10:  Seg 43   513-551      9.29  498.31  1.2e-05       35.0%     56.63
  WD11:  Seg 49   582-622      4.83  314.20  0.00362       10.0%     44.53
  WD12:  Seg 52   626-667      8.33  458.82  4.1e-05       32.5%     50.81
  WD13:  Seg 56   674-713      4.35  294.44  0.00668       17.5%     52.20
  WD14:  Seg 61   725-767      5.42  338.64  0.00170       10.0%     37.79
  WD15:  Seg 64   770-809      3.74  269.32  0.01452       15.0%     41.56
  WD16:  Seg 73   882-921      3.63  264.49  0.01685       12.5%     46.26

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-40     N---------------------ICG-----CFYTGGKILFSNDGN-S---LF-VPV---S-NR-INIYD
   WD 2   44-82     -N--------SCN---T----LKSE-----SRNDIRHITIHPSME-I---II-TID--KF-GY-GCVIN
   WD 3  106-143    -Y--------NNM---L----TPQE-----EQDVVNSAMFTNSGK-Y---FL-ITV---G-RR-VVIWK
   WD 4  144-191    SPCKQNNYKLIKY---N----DICF-----HSLNVISIDISTDDK-Y---FL-TTS--YD-MT-IRIHT
   WD 5  192-235    VK--------KEK---KIKPTILGG-----NKTTIVGAFFSKNGN-F---IF-SVN--KS-GL-IIIWS
   WD 6  321-359    -N--------KIK---D----NTNK-----NKNNNHHNNNNNNND-Y---FN-SSV--KR-AF-EKRWR
   WD 7  365-399    ----------------Y----CNQE-----KNEEVIRSCFNKEKD-I---FV-IAF--SS-GR-FGIYS
   WD 8  403-442    -M--------ISL---Y----NISI-----NTNTIDDITINTDGE-W---IA-LGE--GNNGT-IIIWE
   WD 9  465-509    SP--------IIS---H----LKIGSHIIDNSSTYHESDNFTSKF-V---IV-TGN--ED-GT-IKLYD
   WD10  513-551    -F--------INF---V----TFTA-----HTNTVTDICFLPQGN-A---FI-SCS--LD-GT-VRAFD
   WD11  582-622    -S--------GKK---K----VDKK-----LNVQFLCVGVNISGN-I---VA-AGGRGNE-YV-VYIWN
   WD12  626-667    -G--------KCI---D----KLFG-----HNSPIIKICFSTNLK-NEGVIA-SCS--WS-KN-VLIWD
   WD13  674-713    -K--------GSK---Y----EEIT-----TSHDISYMCFDPRGNDI---LA-VCT--LS-CK-IMFWD
   WD14  725-767    GA--------RDIKRGR----LLGE-----QFGAIPKMNKKRNRK-K---SL-NNV--DE-ES-MYEED
   WD15  770-809    -D--------QGN---N----TIVN-----QNCYFTSIDYIHNGN-Y---IVGCAN--CS-VS-LYIYD
   WD16  882-921    -D--------YLN---S----KLKK-----YKFLLNQLHISGDDR-H---IA-VAC--NT-GLYVFTKD

   WD40 Template    TG--------ECL---R----TLSG-----HTSGVTSVSFSPDGK-R---LV-SGS--ED-GT-IKVWD