Input parameters:

  Query = EG_PF08_0135 (Len=549)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF08_0135, Len=549):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIKSFINNGITIYSLTSGKLNPENSNNSFGRKNKNFQKDVKNNSVEILHDLEFPGKSDEIKISDDGRYFCISGMYPPQVG 80  
WD40-rpts                                                        (______________WD 1___________

Query       81 LYDTKELSIKHRRHFDEEVRTFEFLSSNYEKIVFLCKNRYIEFHNAAGKYHKMRIPKEGRNIMYNKENCNLYICGSFDSI 160 
WD40-rpts      __)   (_________________WD 2________________)(_________________WD 3_____________

Query      161 YNLNLQNGCYENSLKTKNEENNFVCKNPQLPIFCTGGTEGILEIWDERIKKSINFLNMGNEYDELTSCSFSDNGLKIAIG 240 
WD40-rpts      ___)   (_________________WD 4________________)     (_________________WD 5_______

Query      241 SEKGIVKLYDIRHNKPLFIKDHCNDLAINKIEFLKINNNKYIYNNIDDNILYNNDNTSCNEFIASCDSNCIKVYSEKKNN 320 
WD40-rpts      _________)(___________________WD 6__________________)   (_________________WD 7__

Query      321 LLSLQVINFNDEKKNNSSNKKMKLLNNEFININSFTFYKNSGLCFIPCDNKKVFIYFIPIIGIAPEWCNFLDSITEELEE 400 
WD40-rpts      ______________)   (_________________WD 8________________)                       

Query      401 KERYKKDDEIDNFSNELFDDYLFITSQQVDQLNINHLKGTKNLIPYLHGYYIPSKVYADIKSVIHETDFETYKKNLIQKK 480 
WD40-rpts                                                                                      

Query      481 LEQKQQMRIPQKSTLVNKEYVDKLLNKVQKKIDKKQKVLVDAQELLEDKRFSKLFYDPEYMVETVHLDE 549 
WD40-rpts                                                                           

8 WD40-repeats found in QUERY=EG_PF08_0135 (Len=549):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    51-83       3.69  267.20  0.01550       15.0%     41.62
  WD 2:  Seg  7    87-125      4.62  305.69  0.00472       10.0%     52.60
  WD 3:  Seg 11   126-164      3.16  245.05  0.03060        7.5%     52.54
  WD 4:  Seg 15   168-206      7.50  424.46  0.00012       20.0%     55.88
  WD 5:  Seg 19   212-250      7.31  416.51  0.00015       30.0%     54.96
  WD 6:  Seg 23   251-293      5.52  342.49  0.00151        2.5%     46.76
  WD 7:  Seg 27   297-335      5.75  352.32  0.00111       10.0%     33.57
  WD 8:  Seg 30   339-377      5.83  355.54  0.00101        7.5%     49.38

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   51-83     -----------LEFPGKSDEIKISDDGRYFCISGMYPPQVGLYD
   WD 2   87-125    -LS---IKHRRHFDEEVRTFEFLSSNYEKI-VFLCKNRYIEFHN
   WD 3  126-164    AAG---KYHKMRIPKEG-RNIMYNKENCNL-YICGSFDSIYNLN
   WD 4  168-206    -GC---YENSLKTKNEENNFVCKNPQLPIF-CTGGTEGILEIWD
   WD 5  212-250    -SI---NFLNMGNEYDELTSCSFSDNGLKI-AIGSEKGIVKLYD
   WD 6  251-293    IRHNKPLFIKDHCNDLAINKIEFLKINNNK-YIYNNIDDNILYN
   WD 7  297-335    -TS---CNEFIASCDSNCIKVYSEKKNNLL-SLQVINFNDEKKN
   WD 8  339-377    -NK---KMKLLNNEFININSFTFYKNSGLC-FIPCDNKKVFIYF

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD