WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF10_0045 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF10_0045 (Len=3013) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF10_0045, Len=3013): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNEDLKLGSVVWPNFSSPFSLSCYAVNESCSTLAAGSYEGSIILFRIDENKVEYVSNKRKGKMGEGYVKKDEYDDKSDNK 80
WD40-rpts
Query 81 ISESFSSSTNHMVDETCDKKNKKEELLNVDDDKMSVDINENNENNKNNENNKNNKNNENNKNNHNSKNNIDNINNIDNIN 160
WD40-rpts
Query 161 NIDNINNIDNINNIDNINNCMNNLSNNNFKRDNSKKFLKQNRKRFSNRINLLPYNILLNNSNNTCNNSIVQLCYGLTCCN 240
WD40-rpts (__________________________WD 1____
Query 241 LIECVSKEILISLHVDNMIYFWSIDEGRCFKVLKNFDFLIYNLRILPDRRFLLISGEKKVLVLDIWANSNKEIIAELNFS 320
WD40-rpts ______________________)
Query 321 SNQNTQNEYNKSEKTKNVNDSKEEEDYYIGDIDDKNYSSSYGSDDNNMYNMNSMYDYLNNNMSSDPQESNIYINSKNKNY 400
WD40-rpts
Query 401 GYNKLDRDKYNDKYKDKDINSNIQEETMNIKNMFGVSSRYINDNNNNNNNKSQKYRQSNNIHTCDLKLCSIATGVVPYLK 480
WD40-rpts
Query 481 EDNQRSVIQCFKLLKRKLFSIDDKKEKDMNNKNIKKSYEKLYEDLFINNNNSNNDTSNYNNNNNNNNNNNNCNNIFNDEY 560
WD40-rpts
Query 561 LKLKDKEVNDRLNNLFYCPVLISASLNNGDIICWDLTDFLNYYKCKCRFVIRTEKTELELYNEMIEDISENCIYDELIKT 640
WD40-rpts
Query 641 RISSTNDINLKENDKNIKGKEDIYKKHMGIYNIDPIHIANLNEFEKKTLEIASNGYSSQIAIIDNYIILLQKNRLIIYER 720
WD40-rpts
Query 721 KCLSSSNNPSDPSSNMSSYFVPLMDLFCPDYEETQKRTSHNTHWVGIQVVRRPIWKFSSGIFQMMGFKKKSYNIMQKLSK 800
WD40-rpts
Query 801 NVCGSIIAWTNEGNFYAYSLPLKFSSLFLSFQSNIKSFFLKKVSKDLLGSFNSAVPLIIYRENVRKSDEDIKDTTVDSMN 880
WD40-rpts
Query 881 NKNNKNFEIKISESADMSVFSNKMYSPECIKRLSNSNEELMDNTSKKRSIEKTKGKKGDNIIKVICNDEKKNVLFDDYKN 960
WD40-rpts
Query 961 YEHNRIEKHTKCKEDFFFFFVNKNYKRRIIVYEYLYNIWYKTSKIEKVWLLPKKKNIEHVIHMMKSKDADNMPRTYDNKN 1040
WD40-rpts
Query 1041 DYDDKNYMDKEKYINQNINTFDLNKKNNNNNNNNNTFGDIKKSEGNICSYVIAYYNLNIYIIISYTNGCVISTLINSYNN 1120
WD40-rpts
Query 1121 KLNKEKVIHNLYIPKTLYNKYRRHMFITTLYYENNFLIGGTNHGDILIWKLVNFDLVKILKNCHLSYVCSIHKVVKENYI 1200
WD40-rpts
Query 1201 SNNLKNKKNILDSTVVSNNKKKKKEEQDRDKKKEENLEEIVKEDMSNFKLMEEDHWVLTCDSSNNIILLNLNPIYYDKNR 1280
WD40-rpts
Query 1281 SHCFCQNDPYKICITTDEEIEKYKNSKNSYFKNKENEEKKRKKREEKKQIIYYYVHSLLRRSSGIGKENKNIYNLLKILK 1360
WD40-rpts
Query 1361 YKKNLGMKILRNKYYDDYYHDMFVEEKEMHLYSLKNYGDEQKYSFDLYKNLYKSVSKIKGIQKGRINTNKNKMYDDNFDD 1440
WD40-rpts
Query 1441 DKDKNESNGNFIHNKNGNNQHDHDHDHHHHNNNNNEEESISDNNNSHIKYTRKKKKRTESYIYNKEYYIIQKEKELKNMT 1520
WD40-rpts
Query 1521 GICFHCTCRKLEKKNEINYKLINNIYINTYSSLLYIILLNNYVFIYNYNTGQFIRSIYDSEFMQITNFSYDQCYLKLGVN 1600
WD40-rpts
Query 1601 ITHLNILNRVKIKDVSRHEIYDIIDEEYNIHDDEDDNYYDYNYDGKLSQSNYKYNHVDDIDNNNLKDPQNDYIFNKNKGS 1680
WD40-rpts
Query 1681 NVNYLPPPLSPSYMSPSYMSSSYMSSSYMSSSYMSSSSSYSSSFSSTYSPSICSPAILNSSTENVGKMKVSFDLLYKDNI 1760
WD40-rpts
Query 1761 NEEKNLKSKKEVGLKRENNMYRHNFENNCIYKYIVKTQIPIISFVLFRDSNLSKKCLPLTKLLYHFFMPKNCIQVCKELY 1840
WD40-rpts
Query 1841 PFLINFPSIPFSLCIHGKESTFSFVIPMSTQIYYFSRMHSMKCKKNDIDVYITMGSKQKERYILSEKRKKEKFFYDSLNL 1920
WD40-rpts
Query 1921 EYDYAYNKKFKKKYFLSDILKKKYIYLDVKMGCLKKKSFKNFREFSKYKNLTKQGSVHNNMSNSYGERDRAKEKKVQMGN 2000
WD40-rpts
Query 2001 ALDYNIKKGKTECNDAGDYKEDMHDLNKYEDDDERESHISLHNNAYNCMYYNNKMGNKKKSKSNYNNNDDDKNSSKEKNN 2080
WD40-rpts
Query 2081 TCIDMITNKDKEIIRSDEKNVQTEEYRNRRNYHILHYNYYKDVRVNRKNSNISPKWVLKYLDDDLSNYSSDKSSICLYIK 2160
WD40-rpts
Query 2161 KGNNNNKNNKNNRHSRGKNMMMMMNMNMKRDDKRKKNNVHLNKMNSKVESNTCDDKSFINNIRFEKLKVERRKKCKRNVH 2240
WD40-rpts
Query 2241 KNKEFFFCNNSIEIYCNSVYIKTLYSCFILRFLELWKRWYKIKYNEEVINNFNEYIIDNLPDGIDINLFLLSYISMYPYD 2320
WD40-rpts
Query 2321 KSIRLELQNFMYRKIRNMSDKLLDKYTKTGTEILRINNKKKRIIEKNIDEISLYDTSGTYIISIIIPKVGCLYLYPFIYA 2400
WD40-rpts
Query 2401 DEICLTLLLLLVVVKSEYLRSCKTFYTNASMITLIIHHICYYIFVDTKYFLEKNIKFNKFKLFHFIHLLSLSFSITWDLH 2480
WD40-rpts
Query 2481 ILIQKGIFTNNMKNVSNVTFNLSLKKDDFIFNERLINENYYKSLKDYYVHAEINIDQNDSKMRNTSLTEINLKNYLEDYL 2560
WD40-rpts
Query 2561 EYINKISDIELEKMEANESNNNNNINNMNNINNNNNINNMNNNNVINSFDNIFSYISNEEKYNIRNKSYELLRITSFMDS 2640
WD40-rpts
Query 2641 NSNNSSGYISRFNKKYSLIDKKNKNADNNDNMKRDTSYITFYDNNYNKLDKYNIYGHMNKDYENSNNNMNYNKYDILDNK 2720
WD40-rpts
Query 2721 HDFISNAYEDKKNKRKHFFSKHYNNNHINDNDSNMENDYICRINEHNYINICHFILNIFELYTLSLNNISFLKILINIGR 2800
WD40-rpts
Query 2801 LEPFLFLKTLHYISGNIHKKVSSINKILFLLIILIKNYKCIFIWYMNIIIDILLNSLDPSNNVRILCLKLSTSLIYTLVK 2880
WD40-rpts
Query 2881 YYNICSFNKFTQKLAVVNNINKCIYLYDLKSAKKLKIFQGHKKYIDCIKFNTNGTALASYSKLDLSFKLWNCTNVGLFSG 2960
WD40-rpts (_________________WD 2_________________)
Query 2961 FLKIQSKCTRDIQLSKIKSSYLYLSDSYIDITYKKKNEWILKREDNAIYLIYI 3013
WD40-rpts
 2 WD40-repeats found in QUERY=EG_PF10_0045 (Len=3013): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 206-263 3.23 247.89 0.02806 17.5% 29.83 WD 2: Seg 84 2912-2951 5.77 352.93 0.00109 27.5% 40.26Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 206-263 SNRINLLPYNILLNNSNNTCNNSIVQLCYGLTCCNLIECVSKEILISLHV-DNMIYFWS WD 2 2912-2951 -AKKL----KIFQGHKKYIDCIK-------FNT-------NGTALASYSKLDLSFKLWN WD40 Template TGECL----RTLSGHTSGVTSVS-------FSP-------DGKRLVSGSE-DGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |