WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF10_0079 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF10_0079 (Len=3853) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF10_0079, Len=3853): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MMERGRSNYRRNNENNNFREGNIKNETGDDNHFWTNIDNYYFCNFDKSIISAFENHIKCTDYICNKIKKRKINKKLFKNI 80
WD40-rpts
Query 81 NCYKSSVKIKLNGNDKNEHNNKKLVCAGTNMQYDNYMKFNENNMNNVNNVSNMNNKNNMNNMNNMNNMNNMNNMNNMNNM 160
WD40-rpts
Query 161 INMNNMNNMINMNNVNHMNNINHMNNLNRMNNINHMNNINHMNNINHMNNINHMNNINHMNNIKTSENYNISNNNNKCIQ 240
WD40-rpts
Query 241 NNNINDKILNNQIQNVMTFDDKKSILEFMPMAKNELLLNTLHHLNLRNEHPTNPFPNMYRNPNYFNKDENYMFLKNQGPI 320
WD40-rpts
Query 321 NNLNNNVLPNNNNLNNLNTHVNNQMVENNNKTMPIPLNNLNAYTTNNNDNNNKNNILLNNNEHNNNPVGGTNKLSDKNLE 400
WD40-rpts
Query 401 FLQIEELHNKEGNKNTNDQQVILKEEERDIQVNSNNEKTTNEENILLNDLQKNTNNNETSNDTTPFKDVNDDINILKEEN 480
WD40-rpts
Query 481 EKENVISNKINSINLAHSTIQNDNERINNEDNKNKENVTIQDNYSNNNNNNNINRGCVLNKNQNNINSMNNINNNNNNNN 560
WD40-rpts
Query 561 NNNMNNFNNFHLNQNVPNNDMFKQPLLFNKPNMMNMHAYHMNNMNPSEPPFFNGPIINNNKQSVQGYINPMNHNMVNMYN 640
WD40-rpts
Query 641 SFNPNMRNDIMNKHMMITPNNLNINDDKNMTTDIDKTGYTCPSNMLPYDNMLINNQFRVKDPHAFMRKSHETRIRKFNEN 720
WD40-rpts
Query 721 DIKDDNNDDNNNNNNNNVNLDKYKRSTRSSKYDDNFFNPFLNKKYDGLGKLPYIQNKPIPNGLHISIYIPQSYDFTDEVK 800
WD40-rpts
Query 801 DQDIKTYEDTNKNNDKVNTICDEIKNTEHTDHEKDRKSVSFEQEKSELISNEEYIYERETLARLLTEITFGDKKNLFNPK 880
WD40-rpts
Query 881 MTSENKEKCYNTILNELKTYKSLPIILGNILPYWTKDKNIKKIKKSIEKMNKRKKKVDNPQKYPNLFYKIKNLKRNNDKL 960
WD40-rpts
Query 961 KYIHISNINKKIKRAMMNKQNKKKQNYVFEDELNDLNQINVKQEKKDEYDRSIKTENNESSAKLKDNMNNSKNNSQNLTN 1040
WD40-rpts
Query 1041 TDIKVKNENKDAIYDDGHNNIQNVEINNKNKENNYYTHNNVQGEVLHNYKIDKDDKNENKLNLIYKNVDNEERGKNESKN 1120
WD40-rpts
Query 1121 VDSFDEHIVINKNNNIEEKDTSSFEHNEKITTSIINNDKNEELNKEDGYIYKNIKGNDTIKDGENYIPQDINDDEYDDNH 1200
WD40-rpts
Query 1201 NDQVKVQDKCINYKENHKKKGALKKKRNLLSKFDFLSNFHFDMPYNSSVPFNNSMFSLQRNQYKSCVYFEFVLTNINLDK 1280
WD40-rpts
Query 1281 YRRDILNVNYNNNNTITKRKNIYCINFKKYYKSLQRKRKYINPTNNGINSNTDNINNIKSPINKSSSLCNNNIQNKKEEV 1360
WD40-rpts
Query 1361 NLTCNMVINNNIKNDSIISSLDVNKNSYNNKLREEKRKKKKKKNFMLIKKKKYMEHVNDIFGISNINNISKANIQNYENI 1440
WD40-rpts
Query 1441 ENINKEIFVLFSRYVHNIKQQKKIIGKLIGNIKSEKKKPYKYWYSIEDKMINFYINEYLKNKLNTKHTYTISKQIVDLLK 1520
WD40-rpts (__________________
Query 1521 LRLLINHSSLLPNSWTEKALCNICNIGEDWEDNPIVFCDCCYTPMHSFCSGSKNIKNYNSNKKETTDDEDEQQDQHLQQK 1600
WD40-rpts ________WD 1__________________________)
Query 1601 VEKDKDKDHNNSTNVYIKNQNNFIKDCYSHDHRHGNKKKKKDDKINNKNNHKKKNKNHMTPKMNFNIMEYLMSDNYIHIN 1680
WD40-rpts
Query 1681 SPQSCFNTLTIKNELHESPGNTYDSNDEFLSKHNSNENLNINHNNYKKEKSDFVNNKSDDNTNNNKNNDDDDDNKIVHDN 1760
WD40-rpts
Query 1761 DHNDGNIYNNRNSSFMNSLNNHETIINKNNIDEGNINDILDKDKLYIEENKTSVQETSKSIKNHNVTTGRKETKGTIQKK 1840
WD40-rpts
Query 1841 DTITSSKTNKNKELHEKNVDEEQWICPLCSYLRSQIFFIDDVNAFKIIRRLCCPRKKKDIDLLFKSTTNEYNINTNHNNK 1920
WD40-rpts
Query 1921 NNHNNNSNCNNNIIDDLKREMNSFNAPEEIIVNKEILKLTHKKKSIVLLFDTQNDIQYYKEKYNIEINDAQDFFEKIVLK 2000
WD40-rpts
Query 2001 YKEKYKYITLFNSIVVNKIEGSLNMYEYIYKNFQFFRQETFCITEYVDDSDDESDKEETNITTNVKSDKKKKDFDKGNKM 2080
WD40-rpts
Query 2081 IKEEKIDRRTKLYRLLQSKLHKKEDRRRKKFRNRNKLNINKDINKNGVPNIQVEIKRRGRPPGSTKLSKLLLQNNFPIKS 2160
WD40-rpts
Query 2161 DNIVNDNTSCKNITNNDVTSNILTNNVITNDNITNNIITKDIIKNDSFNNTIHNSDIYTNNNQIYNNTNIQNNTSTNTTA 2240
WD40-rpts
Query 2241 TNITVTNTAATNIIGTNTDSTNTACTNITTTNTNDNNNDNNNINNNNNNNNNNILPNYGALIKSEQNNSLADNKPMYGMK 2320
WD40-rpts
Query 2321 RKKSSDYNCVEKKFNSNNFFLHNDTKLRNHIFSTYNDEFEENNLLLKYNHNKNCSFVFKIPTCCICEFDAFYIGGGPIKR 2400
WD40-rpts
Query 2401 TKKKNEWCHIRCALISNCIINNKIEINNKEKTKYKCSLCLRTNTTGIIKCNVPDCYKYYHISCATSSPKYLIELNDENKL 2480
WD40-rpts
Query 2481 ILFCSNHSQRKAPTEILRRYQILREKEYNKNKLEDKLNISKMFDAYLLQSYLKVCDFKLFNLLSLSSLSVFDKFVHFNYD 2560
WD40-rpts
Query 2561 KFNEHVKKYNINLMDDFNNDIYQNVDHNPFLKEASNMFNNTLEVTKVGRTRRRSSNGSNFIKRDQRDDKLEDKLEDKLED 2640
WD40-rpts
Query 2641 KLEDKLDDKLEDKLEDKLEDKLEDKLDNQLDDNELESKEHSSIHLYQLSDVNQKEEKIGESENDYEGEREFLELENSNRK 2720
WD40-rpts
Query 2721 KNVQIDIFDIENINRISNIKCNNIISIGNFKNIYNENLLDEDTLLKLLSYDFLNIQKDIQEFNSNILSDKYKKLKNFENI 2800
WD40-rpts
Query 2801 LCLYPYFNDYQLRKLSELILEKNSSTLCKINKDDDNTFISSFNKFLSLLNNKDLMLCSVCLSKASYSDKNKEEKKLTEEK 2880
WD40-rpts
Query 2881 IHLSTVENNNLSNSQMTLKLRKLAYANNIKESLETKKERRLGSLSVLKKCTMCNVYICYFCCHRMNIDIMKNYLNNDIKL 2960
WD40-rpts
Query 2961 YNSFSAYNNNINKNNQDKNPFRVKRVGRPSKYRPPIEPPPNPDNINSNNNNNNNNNNNNDNNNDNNNDNTINNNDLKIDD 3040
WD40-rpts
Query 3041 KENKTNISQENITNNNSTTNNKTQNNNYTNASSEQHTSNNHQNEVEDENVKKNNIEHVLNDRKNVQINDNIKEQSNLDNN 3120
WD40-rpts
Query 3121 HNSSCTKNNDIHLNDNINYNNEKTLVENNQICKTKRTSGGIFKKSIDSSTFLNCDKKENDNEFVCPRCEYFKVKKKIGFC 3200
WD40-rpts
Query 3201 SYCPRLDGFLNCFEDKGKKELLFGHPKCMEYVNTAYAKKNSVNDVKSGYNKRICSYCRIKHGVVITCSNTDCDVSFHISC 3280
WD40-rpts
Query 3281 GILLGCKMDNFFGRVDIYNPKKAYCFKHTFQYCKKSNFLNFINANKLFCFENFLYNPFNHLYNFLIGTYVFNHLNKKCSI 3360
WD40-rpts
Query 3361 YLMKPIKIEEQSFTNIFEKTQLNILKKNTNMLTNDMKRSPKGNNKYNMDNRKKMSLINNMNDSKNLLDPSSLYNNDYSNN 3440
WD40-rpts
Query 3441 NNIHKYIKLSNEDDNSRTPSNTLANMPFDIQHDNINSFYSMNNMNNVHPNFGSKFNNNPLFLANKNNMHNTNNPLLNLDH 3520
WD40-rpts
Query 3521 EHNKQSFMNTNNNNVPFKNNNKIFVDDNLTESAVSILSENETEELKSFQNVSLINSRSNPYINNIIQNSFMQYVKKFQGN 3600
WD40-rpts
Query 3601 NTMPQPFNNNAIPNHFLPMYNMFNYPNAQYQNMQNVQNMQNNIMNRNAKFNFIENKRKKYLYQDKNVENTRKNALSEGNI 3680
WD40-rpts
Query 3681 YANVDNGKLQKVDGRKKRRYHKSKNTQSINTGELTTLTNSNSLSINNMDKFNKENISSNMNNNHNPFVKNNIMEEKNINA 3760
WD40-rpts
Query 3761 KNSFFNDSNTNILKEESKVNIKKCEDTVDEEQIYCPVCKSYYEELSDGSPADGLNWIGCDKCEKWYHWICCKYSVDNPPD 3840
WD40-rpts
Query 3841 IENDWYCNSCLNS 3853
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PF10_0079 (Len=3853): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 16 1502-1559 3.15 244.78 0.03086 17.5% 3.71Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1502-1559 KLNTKHTYTISKQIVDLLKLRLLINHSSLLPNSWTEKALCNICNIGEDWEDNPIVFCD WD40 Template TGECLRTLSG---------HTSGVTSVSFSPDG---------KRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |