Input parameters:

  Query = EG_PF10_0126 (Len=380)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF10_0126, Len=380):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSLRLDNNRYISFNQDYGCLCMANEKGFKIYNTNPFTQTYSRDLTDRNKNGLYLAEMLYRCNILAITGNKNDKKGKWAK 80  
WD40-rpts      (______________WD 1_____________)           (___________________WD 2____________

Query       81 NVLIIWDDRQMREIAKLTFSSNIIGVRLLREIIVVILEYKLCIYRLKDIILLETLNTSKNVSGLCCLSNIDKNIIIAYLS 160 
WD40-rpts      ______)                                                                         

Query      161 PIKGRVNIHIFEINSSENIHEELPYINFKTNLSIYAHDNSIGCINLSNDGKLLVTSSTKGTIIRLFNTFDGTLLNEFRRG 240 
WD40-rpts                                 (_________________WD 3_________________)   (_________

Query      241 TKNAKILSLNISEDNNWLCLTSSRNTVHVFSIYKKKRPLRKVDIICKGKNVSPPALLNYEKESKNKKSSLKCLLPCHPYL 320 
WD40-rpts      _________WD 4_________________)   (_________________WD 5________________)       

Query      321 NSEWSFASYKLPGKKISSICAFVNDQNCIIVICSNGIIYKLRFNEHIGGDMFKISSHSFD 380 
WD40-rpts                (_____________WD 6_____________)                  

6 WD40-repeats found in QUERY=EG_PF10_0126 (Len=380):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       4.22  289.07  0.00789       20.0%     41.51
  WD 2:  Seg  5    45-87       3.53  260.54  0.01903        7.5%     16.41
  WD 3:  Seg 16   188-227      7.39  419.95  0.00014       27.5%     55.18
  WD 4:  Seg 20   231-271      6.08  366.01  0.00073       22.5%     54.17
  WD 5:  Seg 24   275-313      4.21  288.50  0.00803        5.0%     -5.29
  WD 6:  Seg 26   331-362      3.29  250.61  0.02581       10.0%     43.55

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ------M---VS--LRLDNNRYISFNQDYGCLCMANEKG--FKIYN
   WD 2   45-87     LTDRNKNGLYLA--EMLYRCNILAITGNKNDKKGKWAKNV-LIIWD
   WD 3  188-227    -FKTNLS---IY--AHDNSIGCINLSNDGKLLVTSSTKGTIIRLFN
   WD 4  231-271    -GTLLNE---FRRGTKNAKILSLNISEDNNWLCLTSSRNT-VHVFS
   WD 5  275-313    -KKRPLR---KV--DIICKGKNVSPPALLNYEKESKNKKS-SLKCL
   WD 6  331-362    -----------L--PGKKISSICAFVNDQNCIIVICSNGI-IYKLR

   WD40 Template    TGECLRT---LS--GHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD