Input parameters:

  Query = EG_PF10_0128 (Len=1220)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF10_0128, Len=1220):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSIISNIEIDMKFFDFYEGDKSVYFCKEYEAFLCLCDDNLYSFKIDEEKNSKYSSLYDILYPTCILESSVDIDDIKENYQ 80  
WD40-rpts                                                                                      

Query       81 KKYLNKRCISLFSSIRYYYYCDNNVFLSTDDNNIHHYVLVYNNNNIKGNDTYDDDIKNGEGVNNNNRDIYLYERKEDIEG 160 
WD40-rpts                                                                                      

Query      161 GGNGNAYSYSYNWIYLEKKKIWKSENIVVSCFYYKDYDDDDYKKLIVGYNNGLINVYNINTYKLKISYKIHNTRITNLKF 240 
WD40-rpts                          (________________WD 1________________)   (________________WD

Query      241 YKNFIISSDVTKNIYIYDIIKRERIITCEDHMGGIIDLLFLEVPNGKNENKAQQNEVNKDGIMINEEDDYISNDESNNDS 320 
WD40-rpts       2_______________)   (_______________WD 3______________)                        

Query      321 DIGIIDNNNNNNNNNNDKNDNHYNDEKKKLHEKNEEKLIGFISIGNDKIMNIWDLNILNSYNEEDMNNLISNNNLSKKKK 400 
WD40-rpts            (_____________________WD 4_____________________)                          

Query      401 NKSNKFNKNNNLLKFNPIKQFYLSSDINHAIIIPSIIFQNENNDEKKKKKKKFIITDENIKWLILTHDNDGNLLFYNPIK 480 
WD40-rpts                              (________________________WD 5_______________________)   

Query      481 GDVIYKYKENINTINPSNISKFFLLKYFLYIFREDSSLLIYDIRYFKLLKNYICKLEGIFEILFFNTNSEQLTCDQKYSI 560 
WD40-rpts      (__________________WD 6__________________)   (________________WD 7______________

Query      561 HNKHADEDDEEEEEDMLYKTSNDEKKKEKKCVILLGDNIIRILRFKNNLISQRLLIGHEDIVSCIKLNEKNLLLFSASND 640 
WD40-rpts      _)   (_________________WD 8________________)(___________________WD 9____________

Query      641 KNIFIWSLRNYYCLYILKDNLYPINAIDVNIKHFPSITLVSVCEDSSLRLWKCTIDEEKLKKNKSHNKKRKLEDIFDNKE 720 
WD40-rpts      ______)   (__________________WD10__________________)                            

Query      721 SIQSTLTIYPHKVLINDIAISPNCKLVATCSKDKTVKIFETQNLKLIHILEGHKKSVQNVYFSKNDNILYSNSYECVRIW 800 
WD40-rpts       (_________________WD11________________)   (________________WD12________________

Query      801 SLNNFECLKSIQSLDFNITRVLILNDSCMINGYSNGNISIINIKNCEKLLTTNYHKDKIFCLQSYEDENKNNNIISASIN 880 
WD40-rpts      )   (________________WD13________________)   (__________________WD14____________

Query      881 GELIFFKDISDKIITEHVFEKRKNIFYENCLENLLKEKKINESLLICLKLDKKFKFKTIVENYLNYYTFSILNILKKYQH 960 
WD40-rpts      ______)                                                                         

Query      961 EYGIKQLINKDKQINNNDIIKKEQNFSQMKNLNNNTLIESSMDTQTSININEANQNIVNNTGDYNNMDNNNFYNIFENSD 1040
WD40-rpts                                                                                      

Query     1041 FLESYIFKELSYMQKKGLSEEAMDDQNVKETEINKSTNADNKKDEKNDPSVKHTNNNDSNDSNDNDYNSKEDDNFVLFLK 1120
WD40-rpts                                                                                      

Query     1121 KMKKKSEHSYFLYLNKLMEFITFFVVNHRCAYISNFLLNSIIKYIDHEDICKINNYQYFFEVYNSYIPRHKNRYVKSLQK 1200
WD40-rpts                                                                                      

Query     1201 SKCFELININYYKGDIKMMS 1220
WD40-rpts                          

14 WD40-repeats found in QUERY=EG_PF10_0128 (Len=1220):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   181-218      4.29  291.84  0.00724       17.5%     29.26
  WD 2:  Seg 14   222-258      5.61  346.34  0.00134       15.0%     54.00
  WD 3:  Seg 18   262-296      2.95  236.45  0.03978       15.0%     20.21
  WD 4:  Seg 22   327-374      3.66  266.02  0.01608       10.0%     22.18
  WD 5:  Seg 27   425-477      4.87  315.66  0.00346        5.0%     41.20
  WD 6:  Seg 31   481-522      5.09  324.83  0.00261       15.0%     43.61
  WD 7:  Seg 35   526-562      4.79  312.38  0.00383       10.0%     46.60
  WD 8:  Seg 39   566-604      6.53  384.24  0.00041       17.5%     44.21
  WD 9:  Seg 42   605-647      7.93  442.34  6.8e-05       30.0%     48.96
  WD10:  Seg 46   651-692      6.66  389.97  0.00035       22.5%     57.25
  WD11:  Seg 52   722-760      7.82  437.61  7.9e-05       22.5%     53.86
  WD12:  Seg 56   764-801      7.44  422.14  0.00013       27.5%     53.31
  WD13:  Seg 60   805-842      6.65  389.20  0.00035       22.5%     51.76
  WD14:  Seg 64   846-887      6.47  381.85  0.00044       20.0%     55.76

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  181-218    IW----------KSE---N--------IVV-----SCFYYKDYDD---D---D---YKKLIVGYNNGLINVYN
   WD 2  222-258    -Y----------KLK---I--------SYK---IHNTRITNLKFY---K---N-----FIISSDVTKNIYIYD
   WD 3  262-296    -R----------ERI---I--------TCE---DHMGGIIDLLFL---E----------VPNGKNENKAQQNE
   WD 4  327-374    NN----------NNN---NNNNNDKNDNHY---NDEKKKLHEKNE---E---K---LIGFISIGNDKIMNIWD
   WD 5  425-477    SDINHAIIIPSIIFQ---N--------ENNDEKKKKKKKFIITDE---N---I---KWLILTHDNDGNLLFYN
   WD 6  481-522    -G----------DVI---Y--------KYK---ENINTINPSNISKFFL---L---KYFLYIFREDSSLLIYD
   WD 7  526-562    -F----------KLL---K--------NYI---CKLEGIFEILFF---N---T---NSEQLTC--DQKYSIHN
   WD 8  566-604    -D----------EDD---E--------EEE---EDMLYKTSNDEK---K---K---EKKCVILLGDNIIRILR
   WD 9  605-647    FK----------NNLISQR--------LLI---GHEDIVSCIKLN---E---K---NLLLFSASNDKNIFIWS
   WD10  651-692    -Y----------YCL---Y--------ILK---DNLYPINAIDVN---IKHFP---SITLVSVCEDSSLRLWK
   WD11  722-760    -I----------QST---L--------TIY---PHKVLINDIAIS---P---N---CKLVATCSKDKTVKIFE
   WD12  764-801    -L----------KLI---H--------ILE---GHKKSVQNVYFS---K---N---DNILYSNSYE-CVRIWS
   WD13  805-842    -F----------ECL---K--------SIQ---SLDFNITRVLIL---N---D---SC-MINGYSNGNISIIN
   WD14  846-887    -C----------EKL---L--------TTN---YHKDKIFCLQSY---E---DENKNNNIISASINGELIFFK

   WD40 Template    TG----------ECL---R--------TLS---GHTSGVTSVSFS---P---D---GKRLVSGSEDGTIKVWD