Input parameters:
Query = EG_PF10_0176 (Len=282)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (EG_PF10_0176, Len=282):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVKIGKKLKGFNEGIPKLNTNINDKIIKEKEENDSEERERQREKYKNEKEHELNEMIFEHDDQQNIHEQYRKLYLENIKD 80
WD40-rpts (______________________________________________WD 1_____________________________
Query 81 SKIYIHDDLQYYLEKNNIPTLLVLLLYRILIEKPENIIKFIIDQIYVFLFTKTETNKKKHALLKPLECTFQQSCEEKEKK 160
WD40-rpts ________________)
Query 161 TKKEQDENNMINSLDGDMNPSFHESINDALQKNNNLIESINYESFIKQHFFGLDNILEMVDFLKIENTEEIYYNNLIHII 240
WD40-rpts
Query 241 KNFQNPINNQILQRENVSYGQTISLNKALCLSETIYNNYFYN 282
WD40-rpts
1 WD40-repeats found in QUERY=EG_PF10_0176 (Len=282):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-97 2.90 234.34 0.04241 12.5% 1.55
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-97 MVKIGKKLKGFNEGIPKLNTNINDKIIKEKEENDSEERERQREKYKNEKEHELNEMIFEHDDQQNIHEQYRKLYLENIKDSKIYIHDDLQYYLEKNN
WD40 Template TGECLRTLSGHTSGVTSVSFSPDG------KRLV----------SG---------------S----------------EDGTIKVW----------D